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Identifier: 16519735

GI number: 16519735

Start: 475702

End: 476985

Strand: Direct

Name: Not Available

Synonym: NGR_a03710

Alternate gene names: 16519735

Gene position: 475702-476985 (Clockwise)

Preceding gene: 16519736

Following gene: 16519734

Centisome position: 88.72

GC content: 59.66

Gene sequence:

>1284_bases
GTGCAGATTGACGCGCGTCATGGCTCTGCTGATAAAACGAGCCACCAAGTGATGCCCTTGCCGTTCGGCAAGCTGGTCCT
GTGCCTGCTCGTCGCTGGGACGATTGCTGCTTTGATAGCCGTTCTGCTCTACCCGCCTCTCAACCCATTGGCGCTGTTTT
CGATGCTCGACTGGAACCTGATCGCGGCGGCGGAACCATTGGTTCGTCAATGCGGTTCGCTGCCTCTCCTAGACAAGTTT
CCGAGCCTCGGCTGGAACACCGTGCTTTTTTGCGCAACCCTTCCCAGCACAGACGAGCCACTGCGGACAGACAGTTTCGT
CGCCCATACGCGCGACACGATCCTCGCCAATCTTGGATCTGTCGAGCCGAACTGGAGGTGGAAGGTCTCCTCAGAGACCC
CGGAGGCTTGCTCGCTCGCCTACCACCGGCAACGAGTTCTGTCAGCCTGGCTGGCAAGCGCGGAGCATTCGGTCTGTCTG
CAAGCGCTTGCCAGGCGCGATACGCGGCTCATCAGCTTCTATTTCGTGCTGTCCGGACATATCGAAATCACCGACCGGCG
GACACGCAAAACACTAAGCATCTCGCCTAATCATGTCGCGAGCGCCCGCGAACGTGCCGGCAACCGAATGACGATCCAAT
CTGAAAGTTCGTGGTTGGCCTTCCATATTCCCGAGTCGGCTCTCAGGCGAAGCTTCGAGGACCTGACCGGTAGACCCTAT
GTGCACGAGTTCGTATTGCCGGCTACCTGCTTTTCTCAAGATGACGTTCAAGGTCTGTATCAGACGCTCCGGCAGGCGGA
AAGGGATCTCAACTCGGCAGCATCGAAAGCCATGCCTTTGTTGGCAAAGGCGTACAAGCAGCTGGCCCTCGTAAAGTTGT
TCTCGACGATGCCGCACAATCTCGCTGAGGCATTCTGTCAGGGAACCAGCGGTGCGGCACCAAGACAGCTCCTTAAAGCT
GAGGCGTTCATGCGCGAGAACCTGACCAACCCTGTTACGATCGAGGACCTCGCCGCCGCTGCCCGGTGCACGCCGCGGGC
GCTCCAGAGGATGTTCCGCACCTATCGAGGAGGCTCGCCCATGAGCGTCCTCTGCAACTATAGGCTCGCCGCCGCCCATG
GCGCCATCAAGGCCGGCCGGGCGGGCAGCATTACCGAGCTGGCCTTGAATCTTCAGTTTTCCAATCCGGGCCGGTTCTCG
GTTCTCTATAAGAGCGCCTACGGTCTCAGCCCCTCGTCCGCCCTTCGTTTCACCCGTAACGAGGGCTCCGTCGAGCAGGC
CTAG

Upstream 100 bases:

>100_bases
CAGCATCTCAGAGTAACGGCCAAAGCCGACGCGCGATCCCTATCCGAAAAACACATCTTCGATCCGGGTTCAGATCGAAT
ATCGCACAGGATGGAGAGCA

Downstream 100 bases:

>100_bases
TCCAAGGGCGACAGACCCAAGCAGCGCTTGGCCCCGGGGAGCGCTCTGCCACTAAAAACGGACAGCGTCCCGACATTCCT
GGACCGCACTCGACGGTTTG

Product: transcription regulator of the AraC-family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MQIDARHGSADKTSHQVMPLPFGKLVLCLLVAGTIAALIAVLLYPPLNPLALFSMLDWNLIAAAEPLVRQCGSLPLLDKF
PSLGWNTVLFCATLPSTDEPLRTDSFVAHTRDTILANLGSVEPNWRWKVSSETPEACSLAYHRQRVLSAWLASAEHSVCL
QALARRDTRLISFYFVLSGHIEITDRRTRKTLSISPNHVASARERAGNRMTIQSESSWLAFHIPESALRRSFEDLTGRPY
VHEFVLPATCFSQDDVQGLYQTLRQAERDLNSAASKAMPLLAKAYKQLALVKLFSTMPHNLAEAFCQGTSGAAPRQLLKA
EAFMRENLTNPVTIEDLAAAARCTPRALQRMFRTYRGGSPMSVLCNYRLAAAHGAIKAGRAGSITELALNLQFSNPGRFS
VLYKSAYGLSPSSALRFTRNEGSVEQA

Sequences:

>Translated_427_residues
MQIDARHGSADKTSHQVMPLPFGKLVLCLLVAGTIAALIAVLLYPPLNPLALFSMLDWNLIAAAEPLVRQCGSLPLLDKF
PSLGWNTVLFCATLPSTDEPLRTDSFVAHTRDTILANLGSVEPNWRWKVSSETPEACSLAYHRQRVLSAWLASAEHSVCL
QALARRDTRLISFYFVLSGHIEITDRRTRKTLSISPNHVASARERAGNRMTIQSESSWLAFHIPESALRRSFEDLTGRPY
VHEFVLPATCFSQDDVQGLYQTLRQAERDLNSAASKAMPLLAKAYKQLALVKLFSTMPHNLAEAFCQGTSGAAPRQLLKA
EAFMRENLTNPVTIEDLAAAARCTPRALQRMFRTYRGGSPMSVLCNYRLAAAHGAIKAGRAGSITELALNLQFSNPGRFS
VLYKSAYGLSPSSALRFTRNEGSVEQA
>Mature_427_residues
MQIDARHGSADKTSHQVMPLPFGKLVLCLLVAGTIAALIAVLLYPPLNPLALFSMLDWNLIAAAEPLVRQCGSLPLLDKF
PSLGWNTVLFCATLPSTDEPLRTDSFVAHTRDTILANLGSVEPNWRWKVSSETPEACSLAYHRQRVLSAWLASAEHSVCL
QALARRDTRLISFYFVLSGHIEITDRRTRKTLSISPNHVASARERAGNRMTIQSESSWLAFHIPESALRRSFEDLTGRPY
VHEFVLPATCFSQDDVQGLYQTLRQAERDLNSAASKAMPLLAKAYKQLALVKLFSTMPHNLAEAFCQGTSGAAPRQLLKA
EAFMRENLTNPVTIEDLAAAARCTPRALQRMFRTYRGGSPMSVLCNYRLAAAHGAIKAGRAGSITELALNLQFSNPGRFS
VLYKSAYGLSPSSALRFTRNEGSVEQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y4FK_RHISN (P55449)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443855.1
- ProteinModelPortal:   P55449
- SMR:   P55449
- GeneID:   962303
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03710
- HOGENOM:   HBG300007
- ProtClustDB:   CLSK2461522
- GO:   GO:0006350
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- Gene3D:   G3DSA:1.10.10.60
- SMART:   SM00342

Pfam domain/function: SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 47032; Mature: 47032

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc5d9f80)-;

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDARHGSADKTSHQVMPLPFGKLVLCLLVAGTIAALIAVLLYPPLNPLALFSMLDWNL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHH
IAAAEPLVRQCGSLPLLDKFPSLGWNTVLFCATLPSTDEPLRTDSFVAHTRDTILANLGS
HHHCCHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
VEPNWRWKVSSETPEACSLAYHRQRVLSAWLASAEHSVCLQALARRDTRLISFYFVLSGH
CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECC
IEITDRRTRKTLSISPNHVASARERAGNRMTIQSESSWLAFHIPESALRRSFEDLTGRPY
EEEECCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCC
VHEFVLPATCFSQDDVQGLYQTLRQAERDLNSAASKAMPLLAKAYKQLALVKLFSTMPHN
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LAEAFCQGTSGAAPRQLLKAEAFMRENLTNPVTIEDLAAAARCTPRALQRMFRTYRGGSP
HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
MSVLCNYRLAAAHGAIKAGRAGSITELALNLQFSNPGRFSVLYKSAYGLSPSSALRFTRN
HHHHHCCHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEHHCCCCHHHHEEEECC
EGSVEQA
CCCCCCH
>Mature Secondary Structure
MQIDARHGSADKTSHQVMPLPFGKLVLCLLVAGTIAALIAVLLYPPLNPLALFSMLDWNL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHH
IAAAEPLVRQCGSLPLLDKFPSLGWNTVLFCATLPSTDEPLRTDSFVAHTRDTILANLGS
HHHCCHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
VEPNWRWKVSSETPEACSLAYHRQRVLSAWLASAEHSVCLQALARRDTRLISFYFVLSGH
CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEECC
IEITDRRTRKTLSISPNHVASARERAGNRMTIQSESSWLAFHIPESALRRSFEDLTGRPY
EEEECCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCC
VHEFVLPATCFSQDDVQGLYQTLRQAERDLNSAASKAMPLLAKAYKQLALVKLFSTMPHN
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LAEAFCQGTSGAAPRQLLKAEAFMRENLTNPVTIEDLAAAARCTPRALQRMFRTYRGGSP
HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
MSVLCNYRLAAAHGAIKAGRAGSITELALNLQFSNPGRFSVLYKSAYGLSPSSALRFTRN
HHHHHCCHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEHHCCCCHHHHEEEECC
EGSVEQA
CCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424