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Identifier: 16519734

GI number: 16519734

Start: 477718

End: 478749

Strand: Direct

Name: Not Available

Synonym: NGR_a03720

Alternate gene names: NA

Gene position: 477718-478749 (Clockwise)

Preceding gene: 16519735

Following gene: 16519733

Centisome position: 89.1

GC content: 60.17

Gene sequence:

>1032_bases
ATGAGAATGAATTTTAGCACTGTGCTTCTCGGCTCCAGCGTTGCCCTTGCAGCAGTCTCTGGTGCACAAGCGGCTGACGC
GATCGTCGCTGCGGAGCCGGAACCGATGGACTACGTTCGCGTCTGCGACGCTTTCGGCATCGGCTATTTCTATATCCCCG
GCACAGAAACGTGCCTGAAGATCAATGGTTACGCTCGTTTCCAGGTCTCGTTTGGCCCGGATGAGGTCAACAAACGCCAA
GGCTGGGGGGCCCAGGGCACGTCCGACTGGGACGCCTTCTCGCGCGCATACATCGCCTTCAGCGCAAAGAGCGACACCGA
ACTTGGAACGCTCACTGGCTTCTTCGCCAGCGAGTTCAACGCTGACAACGACAGCGACGTCGGTGACAGCCTGATCAACC
TCGACGAGGCCTATATCCAGCTCGGCGGTTTCAAGGCGGGTTTCTTCTACAGCTGGTGGGATAAAGGCCTGAACGGCGAA
ACTGACTCGCTGGCGAACATCACCGAGTTCAACTCGATTGCCTACCTCTATGAGGGCGGCGCGTTCCAGGCAGGCGTTGC
CATCAATGAGCTCGAAGGGGCGACCACGAAGGCAAACGGCATCGGCGTGCAGGGCATCGTTTCGGCCACGGTCGGCGGCG
TCTCGATCGACCTTCTCGGCGGTTACGATACCGAGGTCGAGGAAGGAGCCATCCGCGCGCTGGTTTCGGCCGAACTCGGC
CCGGGCGTCTTCCAGATTGCCGGCGTCTGGGCATCCGACCCGAACGTCTATTTCGCCGCTTCCGAGTGGACCGTCGCCAC
CTCGTATCGCTACAACGCCACCGAAAAGCTCGCGATCACCCCGGGGCTTCATTATTGGGGTGATTACGGCTTCGTCAGCG
ATGCGGATCAATGGCGCGGTGGTCTGGCGGTTGACTACAAGATCACCTCTGGGTTGGCGTCACGTGTTTCCGTGCAGTAC
ACAAGTCGCGACATCGGCGCAGACACGGAGGATTTCGTCAGCGGCTTCGTCCGCCTGCAGCGCGACTTCTAA

Upstream 100 bases:

>100_bases
TATTGACGGCCCGTTTCGCCGCAGCGCGAGCGAGGGTGCCGTTGAAGTTCAGGACCGACCTGCCCCGGCCCTTGCCCAAC
CCAAAAGAGAGATCGACCGC

Downstream 100 bases:

>100_bases
TCTGAGCTGAATCGCCACCTGTGGGCGGTTCGGGCACATCGCACTGAAGCGATGTTGCCGTGGTCCGGAACTGTGGCGGC
AGTTCCGGACCCATTCAACA

Product: outer membrane porin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MRMNFSTVLLGSSVALAAVSGAQAADAIVAAEPEPMDYVRVCDAFGIGYFYIPGTETCLKINGYARFQVSFGPDEVNKRQ
GWGAQGTSDWDAFSRAYIAFSAKSDTELGTLTGFFASEFNADNDSDVGDSLINLDEAYIQLGGFKAGFFYSWWDKGLNGE
TDSLANITEFNSIAYLYEGGAFQAGVAINELEGATTKANGIGVQGIVSATVGGVSIDLLGGYDTEVEEGAIRALVSAELG
PGVFQIAGVWASDPNVYFAASEWTVATSYRYNATEKLAITPGLHYWGDYGFVSDADQWRGGLAVDYKITSGLASRVSVQY
TSRDIGADTEDFVSGFVRLQRDF

Sequences:

>Translated_343_residues
MRMNFSTVLLGSSVALAAVSGAQAADAIVAAEPEPMDYVRVCDAFGIGYFYIPGTETCLKINGYARFQVSFGPDEVNKRQ
GWGAQGTSDWDAFSRAYIAFSAKSDTELGTLTGFFASEFNADNDSDVGDSLINLDEAYIQLGGFKAGFFYSWWDKGLNGE
TDSLANITEFNSIAYLYEGGAFQAGVAINELEGATTKANGIGVQGIVSATVGGVSIDLLGGYDTEVEEGAIRALVSAELG
PGVFQIAGVWASDPNVYFAASEWTVATSYRYNATEKLAITPGLHYWGDYGFVSDADQWRGGLAVDYKITSGLASRVSVQY
TSRDIGADTEDFVSGFVRLQRDF
>Mature_343_residues
MRMNFSTVLLGSSVALAAVSGAQAADAIVAAEPEPMDYVRVCDAFGIGYFYIPGTETCLKINGYARFQVSFGPDEVNKRQ
GWGAQGTSDWDAFSRAYIAFSAKSDTELGTLTGFFASEFNADNDSDVGDSLINLDEAYIQLGGFKAGFFYSWWDKGLNGE
TDSLANITEFNSIAYLYEGGAFQAGVAINELEGATTKANGIGVQGIVSATVGGVSIDLLGGYDTEVEEGAIRALVSAELG
PGVFQIAGVWASDPNVYFAASEWTVATSYRYNATEKLAITPGLHYWGDYGFVSDADQWRGGLAVDYKITSGLASRVSVQY
TSRDIGADTEDFVSGFVRLQRDF

Specific function: May act as an outer membrane pore

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4FJ_RHISN (P55448)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443854.1
- ProteinModelPortal:   P55448
- GeneID:   962190
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03720
- HOGENOM:   HBG301020
- ProtClustDB:   CLSK800280
- InterPro:   IPR003684

Pfam domain/function: PF02530 Porin_2

EC number: NA

Molecular weight: Translated: 36714; Mature: 36714

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMNFSTVLLGSSVALAAVSGAQAADAIVAAEPEPMDYVRVCDAFGIGYFYIPGTETCLK
CCCCEEEEEECCCEEEEEECCCCHHCEEEECCCCCCHHHHHHHHHCCCEEEECCCCEEEE
INGYARFQVSFGPDEVNKRQGWGAQGTSDWDAFSRAYIAFSAKSDTELGTLTGFFASEFN
ECCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCEEEEEEECCCCCCCHHEEEHHHHHCC
ADNDSDVGDSLINLDEAYIQLGGFKAGFFYSWWDKGLNGETDSLANITEFNSIAYLYEGG
CCCCCCCCHHHHCCCHHHEEECCEEECCEEHHHHCCCCCCCCCCCCHHHHCCEEEEEECC
AFQAGVAINELEGATTKANGIGVQGIVSATVGGVSIDLLGGYDTEVEEGAIRALVSAELG
CEEECEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCC
PGVFQIAGVWASDPNVYFAASEWTVATSYRYNATEKLAITPGLHYWGDYGFVSDADQWRG
CCEEEEEEEEECCCCEEEEECCEEEEEEEEECCCEEEEECCCCHHCCCCCCCCCHHHHCC
GLAVDYKITSGLASRVSVQYTSRDIGADTEDFVSGFVRLQRDF
CEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRMNFSTVLLGSSVALAAVSGAQAADAIVAAEPEPMDYVRVCDAFGIGYFYIPGTETCLK
CCCCEEEEEECCCEEEEEECCCCHHCEEEECCCCCCHHHHHHHHHCCCEEEECCCCEEEE
INGYARFQVSFGPDEVNKRQGWGAQGTSDWDAFSRAYIAFSAKSDTELGTLTGFFASEFN
ECCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCEEEEEEECCCCCCCHHEEEHHHHHCC
ADNDSDVGDSLINLDEAYIQLGGFKAGFFYSWWDKGLNGETDSLANITEFNSIAYLYEGG
CCCCCCCCHHHHCCCHHHEEECCEEECCEEHHHHCCCCCCCCCCCCHHHHCCEEEEEECC
AFQAGVAINELEGATTKANGIGVQGIVSATVGGVSIDLLGGYDTEVEEGAIRALVSAELG
CEEECEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCC
PGVFQIAGVWASDPNVYFAASEWTVATSYRYNATEKLAITPGLHYWGDYGFVSDADQWRG
CCEEEEEEEEECCCCEEEEECCEEEEEEEEECCCEEEEECCCCHHCCCCCCCCCHHHHCC
GLAVDYKITSGLASRVSVQYTSRDIGADTEDFVSGFVRLQRDF
CEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424