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The map label for this gene is rbcL

Identifier: 15669420

GI number: 15669420

Start: 1178682

End: 1179959

Strand: Reverse

Name: rbcL

Synonym: MJ1235

Alternate gene names: 15669420

Gene position: 1179959-1178682 (Counterclockwise)

Preceding gene: 15669421

Following gene: 15669419

Centisome position: 70.87

GC content: 35.05

Gene sequence:

>1278_bases
ATGGACTACATAAACTTAAACTACAGACCAAATGAAGGTGATTTGTTATCTTGTATGGTAATTAAAGGAGAAAATTTAGA
AAAGTTGGCAAATGAGATTGCTGGGGAGAGCTCTATTGGAACATGGACTAAAGTTCAAACAATGAAAAGCGATATTTATG
AAAAATTAAGACCAAAGGTTTATGAAATTAAAGAGATTGGAGAAGAAAATGGGTATAAAGTTGGACTAATAAAAATTGCC
TATCCATTGTATGATTTTGAAATAAACAACATGCCAGGAGTTTTAGCAGGGATTGCAGGAAATATATTTGGAATGAAGAT
AGCCAAAGGTTTAAGGATATTGGACTTTAGATTTCCAGCGGAGTTTGTTAAAGCTTATAAAGGGCCAAGATTTGGAATTG
AAGGAGTTAGAGAAACTCTAAAAATCAAAGAAAGACCTTTACTGGGGACTATAGTTAAACCAAAAGTTGGTTTAAAAACT
GAAGAGCATGCAAAAGTTGCCTATGAAGCATGGGTTGGAGGGGTTGATTTAGTTAAGGATGATGAAAATTTAACTTCCCA
AGAATTCAATAAATTTGAGGATAGAATTTATAAAACCTTAGAGATGAGAGATAAAGCAGAAGAAGAGACTGGAGAAAGAA
AAGCATATATGCCAAATATAACAGCTCCATACAGAGAGATGATTAGAAGGGCAGAGATTGCTGAAGATGCTGGAAGTGAA
TATGTGATGATAGATGTTGTTGTTTGTGGATTCTCTGCAGTGCAATCATTTAGAGAAGAGGACTTTAAATTTATAATCCA
TGCCCACAGAGCTATGCATGCAGCAATGACAAGAAGTAGAGATTTTGGAATATCCATGTTGGCATTAGCTAAGATTTATA
GGTTGTTAGGAGTTGACCAATTACATATAGGAACAGTTGTTGGAAAGATGGAAGGAGGAGAAAAAGAGGTTAAAGCAATT
AGAGATGAGATTGTTTATGATAAAGTTGAAGCAGACAACGAAAACAAATTTTTCAATCAAGATTGGTTTGATATTAAACC
AGTATTTCCAGTATCTTCTGGCGGAGTTCATCCAAGATTAGTCCCAAAAATAGTTGAGATTTTAGGCAGAGATTTAATTA
TTCAGGCAGGAGGAGGAGTTCATGGACATCCAGATGGGACAAGAGCTGGAGCTAAGGCAATGAGGGCTGCTATTGAGGCA
ATTATAGAAGGAAAATCATTAGAAGAAAAAGCAGAAGAAGTTGCAGAGCTAAAAAAGGCTTTAGAGTATTGGAAATAA

Upstream 100 bases:

>100_bases
AACTAAAGGTAAAGCTTTCTAACACTATTTATATTAGAAACGACCATACAAAAAATTAATAATACTTAATACCAAAGAAT
TCGTGGGGGAGGGATATACT

Downstream 100 bases:

>100_bases
ATAAAAGGGAGACTTATGAGGTTAAAGTTATCCCTAACTCCTAAACAAGATTTTTCTTTTGATAAAATTAATAAACATAC
TATACAGGGTTTTATTTATT

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MDYINLNYRPNEGDLLSCMVIKGENLEKLANEIAGESSIGTWTKVQTMKSDIYEKLRPKVYEIKEIGEENGYKVGLIKIA
YPLYDFEINNMPGVLAGIAGNIFGMKIAKGLRILDFRFPAEFVKAYKGPRFGIEGVRETLKIKERPLLGTIVKPKVGLKT
EEHAKVAYEAWVGGVDLVKDDENLTSQEFNKFEDRIYKTLEMRDKAEEETGERKAYMPNITAPYREMIRRAEIAEDAGSE
YVMIDVVVCGFSAVQSFREEDFKFIIHAHRAMHAAMTRSRDFGISMLALAKIYRLLGVDQLHIGTVVGKMEGGEKEVKAI
RDEIVYDKVEADNENKFFNQDWFDIKPVFPVSSGGVHPRLVPKIVEILGRDLIIQAGGGVHGHPDGTRAGAKAMRAAIEA
IIEGKSLEEKAEEVAELKKALEYWK

Sequences:

>Translated_425_residues
MDYINLNYRPNEGDLLSCMVIKGENLEKLANEIAGESSIGTWTKVQTMKSDIYEKLRPKVYEIKEIGEENGYKVGLIKIA
YPLYDFEINNMPGVLAGIAGNIFGMKIAKGLRILDFRFPAEFVKAYKGPRFGIEGVRETLKIKERPLLGTIVKPKVGLKT
EEHAKVAYEAWVGGVDLVKDDENLTSQEFNKFEDRIYKTLEMRDKAEEETGERKAYMPNITAPYREMIRRAEIAEDAGSE
YVMIDVVVCGFSAVQSFREEDFKFIIHAHRAMHAAMTRSRDFGISMLALAKIYRLLGVDQLHIGTVVGKMEGGEKEVKAI
RDEIVYDKVEADNENKFFNQDWFDIKPVFPVSSGGVHPRLVPKIVEILGRDLIIQAGGGVHGHPDGTRAGAKAMRAAIEA
IIEGKSLEEKAEEVAELKKALEYWK
>Mature_425_residues
MDYINLNYRPNEGDLLSCMVIKGENLEKLANEIAGESSIGTWTKVQTMKSDIYEKLRPKVYEIKEIGEENGYKVGLIKIA
YPLYDFEINNMPGVLAGIAGNIFGMKIAKGLRILDFRFPAEFVKAYKGPRFGIEGVRETLKIKERPLLGTIVKPKVGLKT
EEHAKVAYEAWVGGVDLVKDDENLTSQEFNKFEDRIYKTLEMRDKAEEETGERKAYMPNITAPYREMIRRAEIAEDAGSE
YVMIDVVVCGFSAVQSFREEDFKFIIHAHRAMHAAMTRSRDFGISMLALAKIYRLLGVDQLHIGTVVGKMEGGEKEVKAI
RDEIVYDKVEADNENKFFNQDWFDIKPVFPVSSGGVHPRLVPKIVEILGRDLIIQAGGGVHGHPDGTRAGAKAMRAAIEA
IIEGKSLEEKAEEVAELKKALEYWK

Specific function: Unknown

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type III subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBL_METJA (Q58632)

Other databases:

- EMBL:   L77117
- RefSeq:   NP_248230.1
- ProteinModelPortal:   Q58632
- SMR:   Q58632
- GeneID:   1452131
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1235
- NMPDR:   fig|243232.1.peg.1267
- TIGR:   MJ1235
- HOGENOM:   HBG405441
- OMA:   HRAMHAA
- ProtClustDB:   PRK04208
- BioCyc:   MJAN243232:MJ_1235-MONOMER
- GO:   GO:0009536
- HAMAP:   MF_01133
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017712
- InterPro:   IPR017444
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150
- TIGRFAMs:   TIGR03326

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: =4.1.1.39

Molecular weight: Translated: 47860; Mature: 47860

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: ACT_SITE 153-153 ACT_SITE 269-269 BINDING 101-101 BINDING 155-155 BINDING 270-270 BINDING 302-302 BINDING 353-353

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYINLNYRPNEGDLLSCMVIKGENLEKLANEIAGESSIGTWTKVQTMKSDIYEKLRPKV
CCEEEECEECCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHH
YEIKEIGEENGYKVGLIKIAYPLYDFEINNMPGVLAGIAGNIFGMKIAKGLRILDFRFPA
HHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
EFVKAYKGPRFGIEGVRETLKIKERPLLGTIVKPKVGLKTEEHAKVAYEAWVGGVDLVKD
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCEEEEC
DENLTSQEFNKFEDRIYKTLEMRDKAEEETGERKAYMPNITAPYREMIRRAEIAEDAGSE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
YVMIDVVVCGFSAVQSFREEDFKFIIHAHRAMHAAMTRSRDFGISMLALAKIYRLLGVDQ
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
LHIGTVVGKMEGGEKEVKAIRDEIVYDKVEADNENKFFNQDWFDIKPVFPVSSGGVHPRL
CHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
VPKIVEILGRDLIIQAGGGVHGHPDGTRAGAKAMRAAIEAIIEGKSLEEKAEEVAELKKA
HHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LEYWK
HHHCC
>Mature Secondary Structure
MDYINLNYRPNEGDLLSCMVIKGENLEKLANEIAGESSIGTWTKVQTMKSDIYEKLRPKV
CCEEEECEECCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHH
YEIKEIGEENGYKVGLIKIAYPLYDFEINNMPGVLAGIAGNIFGMKIAKGLRILDFRFPA
HHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
EFVKAYKGPRFGIEGVRETLKIKERPLLGTIVKPKVGLKTEEHAKVAYEAWVGGVDLVKD
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCEEEEC
DENLTSQEFNKFEDRIYKTLEMRDKAEEETGERKAYMPNITAPYREMIRRAEIAEDAGSE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
YVMIDVVVCGFSAVQSFREEDFKFIIHAHRAMHAAMTRSRDFGISMLALAKIYRLLGVDQ
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
LHIGTVVGKMEGGEKEVKAIRDEIVYDKVEADNENKFFNQDWFDIKPVFPVSSGGVHPRL
CHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
VPKIVEILGRDLIIQAGGGVHGHPDGTRAGAKAMRAAIEAIIEGKSLEEKAEEVAELKKA
HHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LEYWK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087; 10049390; 12730164