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The map label for this gene is mcrD

Identifier: 15669033

GI number: 15669033

Start: 769800

End: 770294

Strand: Direct

Name: mcrD

Synonym: MJ0843

Alternate gene names: 15669033

Gene position: 769800-770294 (Clockwise)

Preceding gene: 15669032

Following gene: 15669034

Centisome position: 46.24

GC content: 38.38

Gene sequence:

>495_bases
TTGTTTATGATTGAAGTTGAAATCTTCCCACATAGGTATTTGAAAGCCTCCACAACTGAAAAATTTCTCAATAAAATTTA
TGACTTGAAGACCGTGGAGAGAGTTGTAATCCACGGTCAGCCCCTCCCTAAAGTTATCACTTATGGGCCTGCAAGAGGTT
TGCCAGTGAATCACACAGAGAGGAAGATAATACATGTTAAAGGAGTTCCAGTAGAGCTAACAGTGATGGCAGGGAGATTC
TGGATAACTCTCAGTGATGACAGTGAGTTGGATAAATTAGATGAAATCTGCAAAGAAATGTTCCCATTTGGCTACAACTT
AAGAGTCGGGAAATTCTTAAAAGACAGACCAACAGTTACCGACTATATAAAATATGGTGAAGATGGGGTCTTCCTAATAA
ATGAGATGGACAGAAGATTGATAGGAATGGTTGATCCAAGAAGTAGAATGGCAAACTCTGTTACAGTTGTAGAAAAAGAA
GAAAAAGAGGAATAG

Upstream 100 bases:

>100_bases
TGGAACTGTCTTCAGTGCAATTGATGAATTCAGAGAGCCATTGAAGTATGTCATAAAAGGAGCATTAGAAGTTAAGGACA
AAATCTAAAACTTTAAGTGA

Downstream 100 bases:

>100_bases
TATGCCAGTAGGGAGAAGGGAACAAATTGTGGATTGTAGGTCAGTGATGGGTTTAGGAGAAGGGGGAGGATTAGCACAGA
GAGGGACATTTGCAGAGGCA

Product: methyl coenzyme M reductase I protein McrD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MFMIEVEIFPHRYLKASTTEKFLNKIYDLKTVERVVIHGQPLPKVITYGPARGLPVNHTERKIIHVKGVPVELTVMAGRF
WITLSDDSELDKLDEICKEMFPFGYNLRVGKFLKDRPTVTDYIKYGEDGVFLINEMDRRLIGMVDPRSRMANSVTVVEKE
EKEE

Sequences:

>Translated_164_residues
MFMIEVEIFPHRYLKASTTEKFLNKIYDLKTVERVVIHGQPLPKVITYGPARGLPVNHTERKIIHVKGVPVELTVMAGRF
WITLSDDSELDKLDEICKEMFPFGYNLRVGKFLKDRPTVTDYIKYGEDGVFLINEMDRRLIGMVDPRSRMANSVTVVEKE
EKEE
>Mature_164_residues
MFMIEVEIFPHRYLKASTTEKFLNKIYDLKTVERVVIHGQPLPKVITYGPARGLPVNHTERKIIHVKGVPVELTVMAGRF
WITLSDDSELDKLDEICKEMFPFGYNLRVGKFLKDRPTVTDYIKYGEDGVFLINEMDRRLIGMVDPRSRMANSVTVVEKE
EKEE

Specific function: Unknown

COG id: COG4055

COG function: function code H; Methyl coenzyme M reductase, subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MCRD_METJA (Q58253)

Other databases:

- EMBL:   L77117
- PIR:   C64405
- RefSeq:   NP_247837.1
- ProteinModelPortal:   Q58253
- GeneID:   1451731
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0843
- NMPDR:   fig|243232.1.peg.874
- TIGR:   MJ0843
- HOGENOM:   HBG732741
- OMA:   TTEKFLN
- ProtClustDB:   CLSK876078
- BioCyc:   MJAN243232:MJ_0843-MONOMER
- GO:   GO:0015948
- InterPro:   IPR003901
- PIRSF:   PIRSF005636
- ProDom:   PD005228
- TIGRFAMs:   TIGR03260

Pfam domain/function: PF02505 MCR_D

EC number: NA

Molecular weight: Translated: 19048; Mature: 19048

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMIEVEIFPHRYLKASTTEKFLNKIYDLKTVERVVIHGQPLPKVITYGPARGLPVNHTE
CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCCC
RKIIHVKGVPVELTVMAGRFWITLSDDSELDKLDEICKEMFPFGYNLRVGKFLKDRPTVT
CEEEEECCCCEEEEEEECEEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCHHCCCCCHH
DYIKYGEDGVFLINEMDRRLIGMVDPRSRMANSVTVVEKEEKEE
HHHHCCCCCEEEEECCCHHHCCCCCCHHHHCCCEEEEECCCCCC
>Mature Secondary Structure
MFMIEVEIFPHRYLKASTTEKFLNKIYDLKTVERVVIHGQPLPKVITYGPARGLPVNHTE
CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCCC
RKIIHVKGVPVELTVMAGRFWITLSDDSELDKLDEICKEMFPFGYNLRVGKFLKDRPTVT
CEEEEECCCCEEEEEEECEEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCHHCCCCCHH
DYIKYGEDGVFLINEMDRRLIGMVDPRSRMANSVTVVEKEEKEE
HHHHCCCCCEEEEECCCHHHCCCCCCHHHHCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087