Click here to switch to the map view.

The map label for this gene is rps27e

Identifier: 15668425

GI number: 15668425

Start: 235981

End: 236169

Strand: Direct

Name: rps27e

Synonym: MJ0250

Alternate gene names: 15668425

Gene position: 235981-236169 (Clockwise)

Preceding gene: 15668424

Following gene: 15668427

Centisome position: 14.17

GC content: 39.15

Gene sequence:

>189_bases
ATGATGGAGTTAATCCCACAGCCAAGGACAAAGTTCTTAAGAGTCCAATGTCCAGAATGCAATAACGAGCAGATTGTATT
TGGAAGTCCAGCTACCGTTGTTAAGTGTTTAACATGTGGGAAGGTTTTAGTTGAGCCAAGAGGAGGAAAAGGAAAAGTTA
AAGCCAAGATATTGGAGATTTTAGGATAA

Upstream 100 bases:

>100_bases
AGGTCAGGAAGATTTGAGTTCGTTGAGAAATAAATTTTAAAAACCTTAATAAATTTATAAAACTCTTTTAAACACTTTAA
ACAAAATTGTAGAGAGGGAG

Downstream 100 bases:

>100_bases
ATCTTCCATCCATTTTTTAATAATTTGTTTATCACGTTGGAAAAGTTTTATATTTGATAATAATTAATTTGAAATTTTTA
TTTGGTTATTTAATATAATT

Product: 30S ribosomal protein S27e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 62; Mature: 62

Protein sequence:

>62_residues
MMELIPQPRTKFLRVQCPECNNEQIVFGSPATVVKCLTCGKVLVEPRGGKGKVKAKILEILG

Sequences:

>Translated_62_residues
MMELIPQPRTKFLRVQCPECNNEQIVFGSPATVVKCLTCGKVLVEPRGGKGKVKAKILEILG
>Mature_62_residues
MMELIPQPRTKFLRVQCPECNNEQIVFGSPATVVKCLTCGKVLVEPRGGKGKVKAKILEILG

Specific function: Unknown

COG id: COG2051

COG function: function code J; Ribosomal protein S27E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S27e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS27_METJA (P54028)

Other databases:

- EMBL:   L77117
- PIR:   C64331
- RefSeq:   NP_247221.1
- ProteinModelPortal:   P54028
- SMR:   P54028
- GeneID:   1451104
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0250
- NMPDR:   fig|243232.1.peg.258
- TIGR:   MJ0250
- HOGENOM:   HBG392194
- OMA:   CIDCGNE
- ProtClustDB:   PRK00415
- BioCyc:   MJAN243232:MJ_0250-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00371
- InterPro:   IPR000592
- InterPro:   IPR022959
- InterPro:   IPR011332
- PANTHER:   PTHR11594

Pfam domain/function: PF01667 Ribosomal_S27e; SSF57829 Ribosomal_zn-bd

EC number: NA

Molecular weight: Translated: 6797; Mature: 6797

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS01168 RIBOSOMAL_S27E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
6.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMELIPQPRTKFLRVQCPECNNEQIVFGSPATVVKCLTCGKVLVEPRGGKGKVKAKILEI
CCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHCCEEEEECCCCCCCHHHHEEEC
LG
CC
>Mature Secondary Structure
MMELIPQPRTKFLRVQCPECNNEQIVFGSPATVVKCLTCGKVLVEPRGGKGKVKAKILEI
CCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHCCEEEEECCCCCCCHHHHEEEC
LG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087