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The map label for this gene is cdhD

Identifier: 15668284

GI number: 15668284

Start: 110328

End: 111545

Strand: Reverse

Name: cdhD

Synonym: MJ0113

Alternate gene names: 15668284

Gene position: 111545-110328 (Counterclockwise)

Preceding gene: 15668286

Following gene: 15668283

Centisome position: 6.7

GC content: 36.29

Gene sequence:

>1218_bases
ATGATTTATAATGACAGATTGGGTGAGGTTATGGATTTAAATACTTTGATAAAAATCATTGAAAAAGTTGGTAGAATTGA
GATTGAGGATATAAAAATCACCGCAGATGAATTAATTATAAATATCCCATCAGCCCCTCCAATAGTTATTCCTCAAACAC
CATCAATAAAAGAAAAATTGGCTGAAGAAGGAATTATAGAAATTAAAGATGTCCCAGAGTTAGATTGGGAACCACCAGTT
GAAAAATATCCTGGATATATAAGAGAAGTCCAATTTGGAAAACCAAAATCAGAAGGAGGAAGAGGAAAAGTTGTGAAAAT
TGGGGGACAGAGAGCTTTATATAGATTTGAAGAACCACAGCCAAATCCACCAGTTGTTACTTTCGATATATTCGATATAC
CAATGCCAGGATTACCAAAACCAATTAGGCAGTTTTTCCAGGATGTTATGGAAGACCCTTGCGAATGGGCAAAGAAGTGT
GTTAAAGAATTTGGGGCAGATATGATAACAATTCACCACATCTCCACAGACCCAAAAATTAAAGATAAAAGTCCAAAAGA
AGCTGCAAAATTAATGGAAGATTTATTACAGGCAGTTGATGTTCCATTTGTTATTGGAGGTAGTGGAAATCCTCAAAAAG
ACCCTTTAGTTTTGGAAGCATGTGCTGAAGTAGCAGAAGGAGATAGATGCTTATTAGCTTCAGCAAACTTGGAGTTGGAT
TATAAAAAGATAGTTGATGCAGCTATGAAATATGACCACAACGTATTAGCATGGAGTATTATGGACCCAAATATGGCGAG
AGATTTAAATAGAAAACTTGTTGAAGCTGGTTTGGACCCAAATAGAATAGTTATGGATCCAACAACATGTGCTTTAGGTT
ATGGGATTGAGTTCTCAATCAACGCAATGGTTAGATTAAGATTAAATGGATTGAAGGGAGATGAGTTGGTTAATATGCCA
ATGTCATCTGGAACAACAAACGCTATTGGAGCAAGAGAGGCATGGATGAACAATCCTGAATGGGGGCCAAGAGAGTATAG
ATTACCATTATGGGAAATAACTACTGGAATTACGATGATGATGTGTGGAGTAGATTTATTCATGATGCTCAATCCAATAT
CAGTTAAAACACTGAAAGAGATTGGAAAAACTCTAACAACCAAGCCAGGAGAGGTTAAACTAAACACAAACAACTATGAG
TGGATTGTCAGCCCATAG

Upstream 100 bases:

>100_bases
TAAAATAAAATATTTTTTATTTTTTAGAAATTTTCCTTTAAAAAATTGAAATAATAACGTTTATATATGAAGTTTGGTAA
TAACTTAATCTTAATCTATA

Downstream 100 bases:

>100_bases
GAGGAGACCTCCTATTGGGATACCTCCCGTCCATTAAGTTGGGGCTATCAGCCCCAATTAATGTCCAAGCTTAGTTAAAT
ACGTAAGATAAACACCAACA

Product: acetyl-CoA decarbonylase/synthase complex subunit delta

Products: CO2; AH2

Alternate protein names: ACDS complex subunit delta; Corrinoid/iron-sulfur component small subunit

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MIYNDRLGEVMDLNTLIKIIEKVGRIEIEDIKITADELIINIPSAPPIVIPQTPSIKEKLAEEGIIEIKDVPELDWEPPV
EKYPGYIREVQFGKPKSEGGRGKVVKIGGQRALYRFEEPQPNPPVVTFDIFDIPMPGLPKPIRQFFQDVMEDPCEWAKKC
VKEFGADMITIHHISTDPKIKDKSPKEAAKLMEDLLQAVDVPFVIGGSGNPQKDPLVLEACAEVAEGDRCLLASANLELD
YKKIVDAAMKYDHNVLAWSIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSINAMVRLRLNGLKGDELVNMP
MSSGTTNAIGAREAWMNNPEWGPREYRLPLWEITTGITMMMCGVDLFMMLNPISVKTLKEIGKTLTTKPGEVKLNTNNYE
WIVSP

Sequences:

>Translated_405_residues
MIYNDRLGEVMDLNTLIKIIEKVGRIEIEDIKITADELIINIPSAPPIVIPQTPSIKEKLAEEGIIEIKDVPELDWEPPV
EKYPGYIREVQFGKPKSEGGRGKVVKIGGQRALYRFEEPQPNPPVVTFDIFDIPMPGLPKPIRQFFQDVMEDPCEWAKKC
VKEFGADMITIHHISTDPKIKDKSPKEAAKLMEDLLQAVDVPFVIGGSGNPQKDPLVLEACAEVAEGDRCLLASANLELD
YKKIVDAAMKYDHNVLAWSIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSINAMVRLRLNGLKGDELVNMP
MSSGTTNAIGAREAWMNNPEWGPREYRLPLWEITTGITMMMCGVDLFMMLNPISVKTLKEIGKTLTTKPGEVKLNTNNYE
WIVSP
>Mature_405_residues
MIYNDRLGEVMDLNTLIKIIEKVGRIEIEDIKITADELIINIPSAPPIVIPQTPSIKEKLAEEGIIEIKDVPELDWEPPV
EKYPGYIREVQFGKPKSEGGRGKVVKIGGQRALYRFEEPQPNPPVVTFDIFDIPMPGLPKPIRQFFQDVMEDPCEWAKKC
VKEFGADMITIHHISTDPKIKDKSPKEAAKLMEDLLQAVDVPFVIGGSGNPQKDPLVLEACAEVAEGDRCLLASANLELD
YKKIVDAAMKYDHNVLAWSIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSINAMVRLRLNGLKGDELVNMP
MSSGTTNAIGAREAWMNNPEWGPREYRLPLWEITTGITMMMCGVDLFMMLNPISVKTLKEIGKTLTTKPGEVKLNTNNYE
WIVSP

Specific function: Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). Probably maintains the overall quaternary structure of the ACDS complex

COG id: COG2069

COG function: function code C; CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdhD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ACDD_METJA (Q57577)

Other databases:

- EMBL:   L77117
- PIR:   A64314
- RefSeq:   NP_247077.1
- ProteinModelPortal:   Q57577
- SMR:   Q57577
- GeneID:   1450954
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0113
- NMPDR:   fig|243232.1.peg.114
- TIGR:   MJ0113
- HOGENOM:   HBG456967
- OMA:   IVMDPTT
- ProtClustDB:   PRK04452
- BioCyc:   MJAN243232:MJ_0113-MONOMER
- HAMAP:   MF_01135
- InterPro:   IPR016041
- InterPro:   IPR004486
- InterPro:   IPR011005
- InterPro:   IPR000489
- Gene3D:   G3DSA:3.20.20.20
- TIGRFAMs:   TIGR00381

Pfam domain/function: PF03599 CdhD; SSF51717 DHP_synth_like

EC number: 1.2.99.2

Molecular weight: Translated: 45344; Mature: 45344

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYNDRLGEVMDLNTLIKIIEKVGRIEIEDIKITADELIINIPSAPPIVIPQTPSIKEKL
CCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEHHHEEEECCCCCCEEECCCCCHHHHH
AEEGIIEIKDVPELDWEPPVEKYPGYIREVQFGKPKSEGGRGKVVKIGGQRALYRFEEPQ
HHCCCEEEECCCCCCCCCCHHHCCCHHEEEECCCCCCCCCCCCEEEECCCEEEEECCCCC
PNPPVVTFDIFDIPMPGLPKPIRQFFQDVMEDPCEWAKKCVKEFGADMITIHHISTDPKI
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEECCCCCC
KDKSPKEAAKLMEDLLQAVDVPFVIGGSGNPQKDPLVLEACAEVAEGDRCLLASANLELD
CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCH
YKKIVDAAMKYDHNVLAWSIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSI
HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEEEE
NAMVRLRLNGLKGDELVNMPMSSGTTNAIGAREAWMNNPEWGPREYRLPLWEITTGITMM
EEEEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHCCCHHHHHHHHHHH
MCGVDLFMMLNPISVKTLKEIGKTLTTKPGEVKLNTNNYEWIVSP
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEECC
>Mature Secondary Structure
MIYNDRLGEVMDLNTLIKIIEKVGRIEIEDIKITADELIINIPSAPPIVIPQTPSIKEKL
CCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEHHHEEEECCCCCCEEECCCCCHHHHH
AEEGIIEIKDVPELDWEPPVEKYPGYIREVQFGKPKSEGGRGKVVKIGGQRALYRFEEPQ
HHCCCEEEECCCCCCCCCCHHHCCCHHEEEECCCCCCCCCCCCEEEECCCEEEEECCCCC
PNPPVVTFDIFDIPMPGLPKPIRQFFQDVMEDPCEWAKKCVKEFGADMITIHHISTDPKI
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEECCCCCC
KDKSPKEAAKLMEDLLQAVDVPFVIGGSGNPQKDPLVLEACAEVAEGDRCLLASANLELD
CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCH
YKKIVDAAMKYDHNVLAWSIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSI
HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEEEE
NAMVRLRLNGLKGDELVNMPMSSGTTNAIGAREAWMNNPEWGPREYRLPLWEITTGITMM
EEEEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHCCCHHHHHHHHHHH
MCGVDLFMMLNPISVKTLKEIGKTLTTKPGEVKLNTNNYEWIVSP
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: CO; H2O; A

Specific reaction: CO + H2O + A = CO2 + AH2

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087