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The map label for this gene is yibD [C]

Identifier: 16273473

GI number: 16273473

Start: 1646702

End: 1647673

Strand: Direct

Name: yibD [C]

Synonym: HI1578

Alternate gene names: 16273473

Gene position: 1646702-1647673 (Clockwise)

Preceding gene: 161350019

Following gene: 16273477

Centisome position: 89.98

GC content: 26.85

Gene sequence:

>972_bases
ATGGAAAATTGTCCATTAGTATCGGTTATTGTTTGTGCTTATAACGCTGAGCAATATATAGATGAAAGCATTTCATCCAT
TATTAATCAGACTTATGAAAATCTAGAAATTATAGTTATCAATGATGGTTCAACAGATTTGACTTTGTCTCATTTAGAAG
AAATATCTAAATTAGATAAAAGGATAAAAATTATCAGTAATAAATATAATTTAGGGTTCATAAATTCTTTGAATATAGGC
CTTGGTTGTTTTTCAGGTAAATATTTTGCAAGAATGGATGCTGATGATATAGCTAAACCATCGTGGATTGAGAAAATAGT
TACCTATCTGGAGAAAAATGATCATATTACAGCAATGGGATCATACTTAGAGATTATTGTAGAAAAAGAATGTGGAATTA
TCGGTTCTCAATATAAAACTGGAGATATATGGAAAAATCCATTGCTACATAATGATATTTGTGAAGCTATGCTTTTCTAT
AATCCGATACATAACAACACTATGATTATGAGAGCAAATGTATATAGAGAGCATAAATTAATCTTTAATAAAGATTATCC
GTATGCAGAAGATTATAAGTTTTGGTCAGAGGTTAGTAGGCTTGGTTGTTTAGCTAATTATCCTGAAGCATTAGTAAAAT
ATAGACTACATGGAAACCAAACATCATCAGTTTATAATCATGAGCAAAATGAGACAGCTAAAAAGATAAAGAGGGAAAAT
ATTACATATTACCTTAATAAGATAGGTATAGATATAAAAGTAATTAATAGTGTGTCGTTGCTAGAAATATATCATGTGGA
TAAAAGTAATAAAGTGTTGAAAAGTATACTTTATGAGATGTATATGAGCTTAGATAAATATACTATAACTTCACTCTTAC
ATTTTATTAAATATCATCTTGAATTATTTGATTTAAAGCAAAATTTAAAGATTATAAAAAAGTTCATAAGAAAAATAAAT
GTTATATTTTAG

Upstream 100 bases:

>100_bases
ATTAATTTAGGAGAGTTTTAATTGGTTATCTATGCATCTCCTTTTGTTATTTAAATAACGTATAAAATAGTTTAAAGAAG
AGTGTAAAATTAGAGCTTAT

Downstream 100 bases:

>100_bases
ATAGAGTGTTCAGAAAGGGGAACCAAATTCCAAGTTTTCTAAAGGACTAAATTCTAATTTAGTCCTTTAAATTTATCTTA
GATAGACGATAATATATATT

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MENCPLVSVIVCAYNAEQYIDESISSIINQTYENLEIIVINDGSTDLTLSHLEEISKLDKRIKIISNKYNLGFINSLNIG
LGCFSGKYFARMDADDIAKPSWIEKIVTYLEKNDHITAMGSYLEIIVEKECGIIGSQYKTGDIWKNPLLHNDICEAMLFY
NPIHNNTMIMRANVYREHKLIFNKDYPYAEDYKFWSEVSRLGCLANYPEALVKYRLHGNQTSSVYNHEQNETAKKIKREN
ITYYLNKIGIDIKVINSVSLLEIYHVDKSNKVLKSILYEMYMSLDKYTITSLLHFIKYHLELFDLKQNLKIIKKFIRKIN
VIF

Sequences:

>Translated_323_residues
MENCPLVSVIVCAYNAEQYIDESISSIINQTYENLEIIVINDGSTDLTLSHLEEISKLDKRIKIISNKYNLGFINSLNIG
LGCFSGKYFARMDADDIAKPSWIEKIVTYLEKNDHITAMGSYLEIIVEKECGIIGSQYKTGDIWKNPLLHNDICEAMLFY
NPIHNNTMIMRANVYREHKLIFNKDYPYAEDYKFWSEVSRLGCLANYPEALVKYRLHGNQTSSVYNHEQNETAKKIKREN
ITYYLNKIGIDIKVINSVSLLEIYHVDKSNKVLKSILYEMYMSLDKYTITSLLHFIKYHLELFDLKQNLKIIKKFIRKIN
VIF
>Mature_323_residues
MENCPLVSVIVCAYNAEQYIDESISSIINQTYENLEIIVINDGSTDLTLSHLEEISKLDKRIKIISNKYNLGFINSLNIG
LGCFSGKYFARMDADDIAKPSWIEKIVTYLEKNDHITAMGSYLEIIVEKECGIIGSQYKTGDIWKNPLLHNDICEAMLFY
NPIHNNTMIMRANVYREHKLIFNKDYPYAEDYKFWSEVSRLGCLANYPEALVKYRLHGNQTSSVYNHEQNETAKKIKREN
ITYYLNKIGIDIKVINSVSLLEIYHVDKSNKVLKSILYEMYMSLDKYTITSLLHFIKYHLELFDLKQNLKIIKKFIRKIN
VIF

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family

Homologues:

Organism=Escherichia coli, GI1790044, Length=146, Percent_Identity=29.4520547945205, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1787259, Length=93, Percent_Identity=31.1827956989247, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1578_HAEIN (Q57287)

Other databases:

- EMBL:   L42023
- PIR:   H64130
- RefSeq:   NP_439724.1
- ProteinModelPortal:   Q57287
- GeneID:   950438
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1578
- NMPDR:   fig|71421.1.peg.1499
- TIGR:   HI_1578
- HOGENOM:   HBG576328
- OMA:   NDICEAM
- ProtClustDB:   CLSK2301761
- BioCyc:   HINF71421:HI_1578-MONOMER
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37681; Mature: 37681

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENCPLVSVIVCAYNAEQYIDESISSIINQTYENLEIIVINDGSTDLTLSHLEEISKLDK
CCCCCEEEEHEECCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEHHHHHHHHHHHH
RIKIISNKYNLGFINSLNIGLGCFSGKYFARMDADDIAKPSWIEKIVTYLEKNDHITAMG
HHHHHCCCCCEEEEEECCCCEEEECCCEEEECCHHHCCCCHHHHHHHHHHHCCCCEEEHH
SYLEIIVEKECGIIGSQYKTGDIWKNPLLHNDICEAMLFYNPIHNNTMIMRANVYREHKL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHEEEEE
IFNKDYPYAEDYKFWSEVSRLGCLANYPEALVKYRLHGNQTSSVYNHEQNETAKKIKREN
EEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCC
ITYYLNKIGIDIKVINSVSLLEIYHVDKSNKVLKSILYEMYMSLDKYTITSLLHFIKYHL
HHEEEEHHCCEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELFDLKQNLKIIKKFIRKINVIF
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENCPLVSVIVCAYNAEQYIDESISSIINQTYENLEIIVINDGSTDLTLSHLEEISKLDK
CCCCCEEEEHEECCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEHHHHHHHHHHHH
RIKIISNKYNLGFINSLNIGLGCFSGKYFARMDADDIAKPSWIEKIVTYLEKNDHITAMG
HHHHHCCCCCEEEEEECCCCEEEECCCEEEECCHHHCCCCHHHHHHHHHHHCCCCEEEHH
SYLEIIVEKECGIIGSQYKTGDIWKNPLLHNDICEAMLFYNPIHNNTMIMRANVYREHKL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHEEEEE
IFNKDYPYAEDYKFWSEVSRLGCLANYPEALVKYRLHGNQTSSVYNHEQNETAKKIKREN
EEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCC
ITYYLNKIGIDIKVINSVSLLEIYHVDKSNKVLKSILYEMYMSLDKYTITSLLHFIKYHL
HHEEEEHHCCEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELFDLKQNLKIIKKFIRKINVIF
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800