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The map label for this gene is yrbD [C]

Identifier: 16273013

GI number: 16273013

Start: 1150327

End: 1150830

Strand: Reverse

Name: yrbD [C]

Synonym: HI1085

Alternate gene names: 16273013

Gene position: 1150830-1150327 (Counterclockwise)

Preceding gene: 16273014

Following gene: 16273012

Centisome position: 62.88

GC content: 34.92

Gene sequence:

>504_bases
ATGAGACAAACAATTAAATATGAATTTTGGGTTGGATTATTTTTATTACTTGGTATTGGTGCCTTAGTTTTTTTAGGTTT
ACGCGTAGCCAACGTACAAGGTTTTGCTGAGACGAAATCTTATACTGTGACGGCAACTTTCGATAATATTGGTGGACTTA
AAGTACGTGCACCACTAAAAATCGGTGGCGTAGTAATTGGACGTGTGAGTGCTATTACTCTTGATGAAAAAAGCTATTTA
CCGAAAGTAAGCATCGCGATTAATCAAGAATATAATGAAATTCCAGAAAACAGTTCTTTATCAATTAAAACATCAGGTTT
ATTAGGTGAGCAATATATTGCCTTGACAATGGGTTTTGATGATGGAGATACAGCAATGCTTAAAAATGGTAGCCAGATTC
AAGACACTACATCAGCTATGGTATTGGAAGATTTAATTGGGCAATTCTTATATGGAAGTAAAAAATCGGACGGCAATGAA
AAATCAGAATCCACAGAACAATAG

Upstream 100 bases:

>100_bases
CAAGCTACAACGCGAACAGTTGTGCATGCATCGCTTGTTGTTCTAGGATTAGATTTTATTTTGACTGCTATTATGTTTGG
CGCAGGTTAAGGATTTTTTT

Downstream 100 bases:

>100_bases
GTTAAATTTTATAAATTAGGAGATTGATAATGAACCTTATTCAACTAAAAAAATGGTTTACCATTTTAACTTTCGTATTA
ACCGCATTTTTGGTTACACG

Product: ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTATFDNIGGLKVRAPLKIGGVVIGRVSAITLDEKSYL
PKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTMGFDDGDTAMLKNGSQIQDTTSAMVLEDLIGQFLYGSKKSDGNE
KSESTEQ

Sequences:

>Translated_167_residues
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTATFDNIGGLKVRAPLKIGGVVIGRVSAITLDEKSYL
PKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTMGFDDGDTAMLKNGSQIQDTTSAMVLEDLIGQFLYGSKKSDGNE
KSESTEQ
>Mature_167_residues
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTATFDNIGGLKVRAPLKIGGVVIGRVSAITLDEKSYL
PKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTMGFDDGDTAMLKNGSQIQDTTSAMVLEDLIGQFLYGSKKSDGNE
KSESTEQ

Specific function: Could be part of an ABC transporter complex

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family

Homologues:

Organism=Escherichia coli, GI1789584, Length=164, Percent_Identity=60.3658536585366, Blast_Score=194, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1085_HAEIN (P45029)

Other databases:

- EMBL:   L42023
- PIR:   C64166
- RefSeq:   NP_439242.1
- GeneID:   950060
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1085
- NMPDR:   fig|71421.1.peg.1042
- TIGR:   HI_1085
- HOGENOM:   HBG750933
- OMA:   EQYIGLE
- ProtClustDB:   CLSK869998
- BioCyc:   HINF71421:HI_1085-MONOMER
- GO:   GO:0006810
- InterPro:   IPR003399

Pfam domain/function: PF02470 MCE

EC number: NA

Molecular weight: Translated: 18111; Mature: 18111

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd258d8c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTATFDNIGGLKVRAPLK
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCEE
IGGVVIGRVSAITLDEKSYLPKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTMGFD
ECCEEEEEEEEEEECCCCCCCEEEEEECCCHHHCCCCCCEEEEECCCCCCEEEEEEECCC
DGDTAMLKNGSQIQDTTSAMVLEDLIGQFLYGSKKSDGNEKSESTEQ
CCCHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
>Mature Secondary Structure
MRQTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTATFDNIGGLKVRAPLK
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCEE
IGGVVIGRVSAITLDEKSYLPKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTMGFD
ECCEEEEEEEEEEECCCCCCCEEEEEECCCHHHCCCCCCEEEEECCCCCCEEEEEEECCC
DGDTAMLKNGSQIQDTTSAMVLEDLIGQFLYGSKKSDGNEKSESTEQ
CCCHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800