Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082609

Identifier: 99082609

GI number: 99082609

Start: 2917169

End: 2919958

Strand: Direct

Name: 99082609

Synonym: TM1040_2769

Alternate gene names: NA

Gene position: 2917169-2919958 (Clockwise)

Preceding gene: 99082608

Following gene: 99082610

Centisome position: 91.13

GC content: 63.44

Gene sequence:

>2790_bases
ATGACGATGATCGCGGGCATAGGTTTTGCAAGCCCCTGGCTTCTGCTTGGGCTCTTGGTGTTGCCGATCCTGTGGCTTTT
GCTGCGTGCAATCCCGCCCGCGCCCAAACGGCAGCCCTTTCCTGCCGTGACGCTTTTGCTCGGGCTCAAGGATGACGAGA
GCCTTTCGGATCGCACGCCTTGGTGGCTTTTGCTGTTGAGGATGCTGGCCGTCGCGGCAGCCATCGTGGGGCTCTCCGGG
CCGGTGCTGAACCCCGCACAAGAACAGAGCGGCGATGGGCCGTTGCTGATCGTGATGGATTCCGGCTGGGGCGGCGCGCC
TCATTGGGAGCAAAACCGCAGCCACATTGAGGCAGAACTCAGTGAGGCAGGCCGGGCCGGACGCCCGGTTGCCCTGTTGC
GCCTGACCGAGCCTGAGCCACTGCAATTTCGCGCCGCAGGATATTGGGGACGCCAACTCCCGGGCATGACGCCAGCACCC
TGGGTTGCGTCCCCTGAACAGGTGCGTGCCGCGATGGACCTCATTGCAGAGGTCGAGGGCGGATTTGACACGCTCTGGCT
CAGTGACGGGCTGGCAATGGCGGCGCGCCAGGATCTGGTCACGGCCCTTGGTGAGCGCGGCAACATCGAAGTCTATGAAA
GCGGCGCTCCCGTGATCGGGCTTCTGCCCGCGACCTATGCCGATGGAGCGATCACACTCAGTGCCCAGCGCAGTAATACC
GGGCTGACGCAGGAAATCACGGTGCAGGCCTTGGGTCCGGATCCCAATGGCACCGAAAGGGCGCTGGCCTCCACCACGAT
CACCTTTGACGCAGCGGCCAGCGCTGCAGAGACTCAGATCGCGCTGCCGATGGAGCTGCGCGCCCGCATCAGTCGCTTTG
AAATCCTCAATACGCGTTCCGCCGGGGCGGTTTCGCTCACCGATGATCGCTTGCGGCGGCGGGAAGTGGCACTCATTTCC
GCCCAGAGCGAGGATGAGGGCCTCGCGCTCTTGTCAGCGCTGCACTACCTGCGCCAAGCGCTGGAACCGACGGCGGAGCT
GCTGGAAGGCTCGTTGACGGATCTGCTACCCGCAAACCCGGATGTCGTGGTTCTGGCGGATGTGGCCCGCCTTGCTCCCG
CCCAGGAAGAAGCCCTGATCGACTGGGTCGAGTCGGGTGGGCTTTTGTTGCGGTTCGCCGGACCACGGCTTGCTGCCAGC
GACACCGCACGCGACACTGAGGAACCCTTGATGCCCGTGCGCCTGCGCATCGGCGGGCGCAGCATCGGCGGCGCGATGAG
CTGGGGTGAGCCCAAGGCGCTTGCGCCCTTTGCAGAAGGCTCGCCCTTTTACGGGTTGGACATTCCTCAGGATGTCGCAG
TGAGCTCTCAGGTCATGGCACAGCCCGACCCGGAGCTGGCCAGCCGCGTGGTGGCGGAACTCAGCGATGGCACCCCGCTG
GTGACCCGCAAACCGCTTGGTCAGGGGCAGGTGATCCTGTTTCATGTCACTGCAAATGCAGAATGGAGCAGCCTGCCGCT
TTCGGGGCTGTTCGTAGACATGCTTGAGCGCCTTGCAGTTTCTTCCGCTTCCAAACCGCCCAGCGCTGACGATCTGGAAG
GCACCACGTGGCAAGCCGTCGAAGTGCTGGATGGCTTTGGCCGGTTGACGGACGCGGACACGCTTTCAGGAGTCGCAGGT
CCAGACCTCATCGACGCGCCCTCGGGTCCAACATTGCAACCCGGGCTCTATACCAGCGGCAGCGGAGCCTATGCGCGCAA
TGTACTGCGCGATGGTGATGGTATTGAACCTTCGATCTGGCCTGCCTCGGTTCCAGTCCTTACCTACGAAGGCGCGGCTG
AACGGCCCCTTGGGGGGCTGCTCCTCAGCCTGGCATTGGTGTTGCTTGCGGTGGATATTGCGGCGGCTCTGTGGGTCTCA
GGCCTTTGGTCTCCGGCCAAAGTAGCTACAATTGCACTCGGGATGGGCCTCGCGGGTAGCGGCTTTATTGCTCTGCCGCC
CGCAGCACAGGCGCAGATGGCCACCCCACTCAACCTCCCCTCTGAAACCGAGCTCACCTCTGAGCTGACTCTGGGCCATG
TTCTGACCGGCGATGCGCGAGTCGACCAGATCGCCGCAGAGGGGCTGCGCGGCCTCAGCAATGTCATGACGCTCAGAACA
TCTGTCGAACCCGCGGCACCCTATGGGGTGGACCTGGAAACTGATGAGCTCGCGTTCTTTCCCTTTCTGTATTGGCCCGT
CACCGAGGGCCAGCCGCTGCCCTCATCAGAGGCCTACAGCAAGCTCAACGCTTATCTGCGCACTGGTGGGATGATCCTGT
TTGACACCCGCGACGCGGATCTGACGCAGACAGGGGCCAGCTCGGGCGCGGCACGGCGCTTGCAACAACTGGCGCTGCCG
CTGGATATCCCGCCACTGGAGCCGATCCCCGCCGACCACGTTCTGACTCGCGCTTTCTACCTGCTTCAGGATTTTCCCGG
TCGTCACCCACGCGGACAGATCTGGGTCGAAGCCGCACCGCCGGATGCCAAGCAGGTCGACGGCCTCCCGTTTCGCAATC
TAAACGACGGGGTGACACCCGTGGTGATCGGAGGCAATGACTGGGCGGCCGCATGGGCCGTGGATGAACGCAATTCGCCG
CTTTATCCAGTGGGGCGTGGTTTTTCAGGGGAACGCCAGCGCGAACTGGCCCGCCGTTTTGGGGTCAACCTGCTGATGCA
TGTGCTGACGGGGAACTATAAATCCGATCAGGTCCATGTGCCTGCGCTTCTGGACCGACTGGGGCAGTAA

Upstream 100 bases:

>100_bases
CACTCTGCCGCGCGGCAGGCTGGACGCTTGGGCTGCATCACACCGGCGACAGCGCCCAATCGGGGCTGCTGTGGCTCTAT
CACGCATTGGAGCGGCGGCA

Downstream 100 bases:

>100_bases
AATGATGCAGAAACCAAATCCTGCGGCGCAAGGAGCTCGTGTGGCATGACCCAGACCATCCTCTTTGATCCCCTTGTGCC
CTTGGCGCTGCTGGCCGTGT

Product: double-transmembrane region-like

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 929; Mature: 928

Protein sequence:

>929_residues
MTMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTPWWLLLLRMLAVAAAIVGLSG
PVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAELSEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAP
WVASPEQVRAAMDLIAEVEGGFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNT
GLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRSAGAVSLTDDRLRRREVALIS
AQSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANPDVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAAS
DTARDTEEPLMPVRLRIGGRSIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPL
VTRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAVEVLDGFGRLTDADTLSGVAG
PDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIWPASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVS
GLWSPAKVATIALGMGLAGSGFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRT
SVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDADLTQTGASSGAARRLQQLALP
LDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAPPDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSP
LYPVGRGFSGERQRELARRFGVNLLMHVLTGNYKSDQVHVPALLDRLGQ

Sequences:

>Translated_929_residues
MTMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTPWWLLLLRMLAVAAAIVGLSG
PVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAELSEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAP
WVASPEQVRAAMDLIAEVEGGFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNT
GLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRSAGAVSLTDDRLRRREVALIS
AQSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANPDVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAAS
DTARDTEEPLMPVRLRIGGRSIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPL
VTRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAVEVLDGFGRLTDADTLSGVAG
PDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIWPASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVS
GLWSPAKVATIALGMGLAGSGFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRT
SVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDADLTQTGASSGAARRLQQLALP
LDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAPPDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSP
LYPVGRGFSGERQRELARRFGVNLLMHVLTGNYKSDQVHVPALLDRLGQ
>Mature_928_residues
TMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTPWWLLLLRMLAVAAAIVGLSGP
VLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAELSEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAPW
VASPEQVRAAMDLIAEVEGGFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNTG
LTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRSAGAVSLTDDRLRRREVALISA
QSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANPDVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAASD
TARDTEEPLMPVRLRIGGRSIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPLV
TRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAVEVLDGFGRLTDADTLSGVAGP
DLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIWPASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVSG
LWSPAKVATIALGMGLAGSGFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRTS
VEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDADLTQTGASSGAARRLQQLALPL
DIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAPPDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSPL
YPVGRGFSGERQRELARRFGVNLLMHVLTGNYKSDQVHVPALLDRLGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 98703; Mature: 98571

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTP
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
WWLLLLRMLAVAAAIVGLSGPVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAEL
HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
SEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAPWVASPEQVRAAMDLIAEVEG
HHCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNT
CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCEEEEEECCCCC
GLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRS
CCCEEEEEEEECCCCCCCHHHHHHEEEEECCCCCCCCCEEECCHHHHHHHHHHHEEECCC
AGAVSLTDDRLRRREVALISAQSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANP
CCEEEECHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
DVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAASDTARDTEEPLMPVRLRIGGR
CEEEEECHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
SIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPL
CCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHCHHHHCCCCHHHHHHHHHHHCCCCCE
VTRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAV
EEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
EVLDGFGRLTDADTLSGVAGPDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIW
HHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCCC
PASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVSGLWSPAKVATIALGMGLAGS
CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
GFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRT
CCEECCCCCCHHCCCCCCCCCCCHHHHHHEECEEEECCHHHHHHHHHHHHHHHHHHHHHH
SVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDAD
CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC
LTQTGASSGAARRLQQLALPLDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAP
CHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
PDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSPLYPVGRGFSGERQRELARRF
CCHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
GVNLLMHVLTGNYKSDQVHVPALLDRLGQ
HHHHHHHHHHCCCCCCCEEHHHHHHHHCC
>Mature Secondary Structure 
TMIAGIGFASPWLLLGLLVLPILWLLLRAIPPAPKRQPFPAVTLLLGLKDDESLSDRTP
CEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
WWLLLLRMLAVAAAIVGLSGPVLNPAQEQSGDGPLLIVMDSGWGGAPHWEQNRSHIEAEL
HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
SEAGRAGRPVALLRLTEPEPLQFRAAGYWGRQLPGMTPAPWVASPEQVRAAMDLIAEVEG
HHCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GFDTLWLSDGLAMAARQDLVTALGERGNIEVYESGAPVIGLLPATYADGAITLSAQRSNT
CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCEEEEEECCCCC
GLTQEITVQALGPDPNGTERALASTTITFDAAASAAETQIALPMELRARISRFEILNTRS
CCCEEEEEEEECCCCCCCHHHHHHEEEEECCCCCCCCCEEECCHHHHHHHHHHHEEECCC
AGAVSLTDDRLRRREVALISAQSEDEGLALLSALHYLRQALEPTAELLEGSLTDLLPANP
CCEEEECHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
DVVVLADVARLAPAQEEALIDWVESGGLLLRFAGPRLAASDTARDTEEPLMPVRLRIGGR
CEEEEECHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
SIGGAMSWGEPKALAPFAEGSPFYGLDIPQDVAVSSQVMAQPDPELASRVVAELSDGTPL
CCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHCHHHHCCCCHHHHHHHHHHHCCCCCE
VTRKPLGQGQVILFHVTANAEWSSLPLSGLFVDMLERLAVSSASKPPSADDLEGTTWQAV
EEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
EVLDGFGRLTDADTLSGVAGPDLIDAPSGPTLQPGLYTSGSGAYARNVLRDGDGIEPSIW
HHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCCC
PASVPVLTYEGAAERPLGGLLLSLALVLLAVDIAAALWVSGLWSPAKVATIALGMGLAGS
CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
GFIALPPAAQAQMATPLNLPSETELTSELTLGHVLTGDARVDQIAAEGLRGLSNVMTLRT
CCEECCCCCCHHCCCCCCCCCCCHHHHHHEECEEEECCHHHHHHHHHHHHHHHHHHHHHH
SVEPAAPYGVDLETDELAFFPFLYWPVTEGQPLPSSEAYSKLNAYLRTGGMILFDTRDAD
CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC
LTQTGASSGAARRLQQLALPLDIPPLEPIPADHVLTRAFYLLQDFPGRHPRGQIWVEAAP
CHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
PDAKQVDGLPFRNLNDGVTPVVIGGNDWAAAWAVDERNSPLYPVGRGFSGERQRELARRF
CCHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
GVNLLMHVLTGNYKSDQVHVPALLDRLGQ
HHHHHHHHHHCCCCCCCEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA