| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is aceE [H]
Identifier: 99082576
GI number: 99082576
Start: 2879545
End: 2881929
Strand: Reverse
Name: aceE [H]
Synonym: TM1040_2736
Alternate gene names: 99082576
Gene position: 2881929-2879545 (Counterclockwise)
Preceding gene: 99082577
Following gene: 99082572
Centisome position: 90.03
GC content: 63.44
Gene sequence:
>2385_bases ATGTCCCAGAACATTGAACATCTGAGAACGGTGGAGCAGCGACTGTTGTGGCTGTCCCATTGGATGATCCACAACGCCAA CCATTTGCGCGCCAAGGAGGACGGCATCAAGATCGGTGGCCATCAGGCGTCTTCTGCGTCGATGGTGTCGATCATGACCG CGCTCTACTTCTCGGCGCTTCGCCCCGAGGACCGGGTGGCGGTCAAGCCGCATGCCTCGCCCATCTTTCACGCCATGCAA TACCTCATGGGCCACCAGACTCGCGAGAAGATGGAGAACTTCCGCGGCTACGGCGGTGTGCAAAGCTACCCGAGCCGCAC CAAGGATATTGACGATGTGGACTTCTCCACCGGCTCTGTGGGCCTTGGCGTGGGGATCACCGCGCTTGCGTCGATGGTGC AGGATTTCATCACCGCAAAGGACTGGGGCGGCGATGTCACTCCGGGCCGGATGGTGGCGCTTGTGGGCGATGCCGAGCTT GATGAGGGCAATATCTATGAGGTCTTGCAGGAGGGCTGGAAGAACGACCTGCGCAATACCTGGTGGATCATCGACTACAA CCGCCAGAGCCTTGATGGCATCGTGCGCGAGGGGCTGTTTGGCCGGATCGAGAAAATCTTCGAGGCGTTCGGCTGGGATG TGGTCCGGGTGAAATATGGCGCCCTCCAACGGGCCGCCTTTGAGGAACCCGGCGGCGAGGCCCTGCGTGACTGGATCGAC GCCTGCCCGAACGTGGAATACTCCGCGCTGACCTATATGGGCGGGGCCAACTGGCGCAAACGCCTGATGGAGGATCTGGG CGACCAGGGCGCGGTCTCGGCACTGATCGACAAGCGCAGCGACGCGGAACTGGCGGCGCTGATGGAGAACCTCGGCGGCA ATTGCGTGGAAACGATGGCCGATACATTCGCCGCCATCGACCACGACCGTCCGACCTGCTTTCTGGCCTACACAATCAAG GGCTGGGGCACGCCGATTGCGGGCCACAAGGACAACCACGGCGGCCTCATGACCAAGGCGCAGATGGCCGAGTGGCAGAC CCATATGGGTGTGGCCGAGGGCGAGGAGTGGGAGCTGATGGCGACCGTTTCTGACACGAAGGGCTTTCAGGCCTATCTCG ATCAGGTGCCGTTTTTTGCCAAGGGCGCGCGGCGCCACTCGGACGCGCGGCTTTCGGTGCCGGCGGTTGCGGTGGACACA AGCCGCGAGATTTCAACGCAGATGGCCTTTGGCAAGATCCTTGACGATCTGGCGCGCGGCGACAGCGATCTTGCGGCGCG GATCATGACCACCTCTCCGGATGTGACCGGCACCACGGGGCTTGGTCCATGGGTCAATCGCCGCAAGCTCTTTGCGCGAG AGGCCCAAAAGGACGCCTTTATCGAACATCGCATTCCCTCGACGGCCAAGTGGAATTTTGACCCCAAGGGCCAGCATCTC GAACTGGGTATCGCGGAGATGAACCTGTTCCTGCTGCTGGGCGCGGCGGGCCTGTCGCACAGTCTCTGGGGCAAGCGGGT GATCCCGATTGGCACGGTTTATGATCCCTTTGTGCACCGGGGCTTGGATGCGCTCAACTACGCGTGCTATCAGGATGCGC GCTTCATGATCGTCGGCACGCCCTCGGGGGTGACGCTGGCGCCGGAGGGCGGCGCGCATCAATCCGTGGGCACGCCCCTT ACGGGCATGGCGCAGGATGGGCTTGCGAGTTTTGAACCGGCCTTTGCCGATGAGCTCGCGGTCATTATGGAATGGGCTTT TGACTACATGCAGCGCGATGGCGAAGGCGACCCGGACGAGCGCACCTGGCTGCGCGATGAAACCGGCGGATCGGTCTATC TGCGCCTGACCACCAAACCGCTCGAACAGCCGGGGCAACGGGTTGATGATGCCTTCCGTCAGGGGGCCATTGATGGGGCC TATTGGCTGCGCAAGCCGGGGCCGAACTGTTCAGTTGTGATCGCCTATCAAGGTGCGGTCGCGGATGAGGCGATTGCGGC GGCAGGTCTGGTCGGTGAGCATCGCCGCGACGTTGCCGTTCTGGCGGTGACCTCGGCGGATCGTCTCAATGCAGGCTGGA CCGCCGCGCAGCGGGAACGGGCGCGGGGCAACCCGCAGGCGGTGTCGCATGTGGAGCGTCTCTTGGGGGAACTGCCTGCC CATTGCACCCTGATCACCGCGATTGATGGTCATCCGGCGACGCTCTCGTGGCTGGGCTCGGTTGCAGGGCATCGGGTTGT GTCGCATGGGGTCGAGCATTTCGGCCAGACCGGCACCATCGGGGATCTTTACCGTCACTTCGGTCTCGATCGGCACAGCC TCGCGCGTTCCGTGGGCGAGCTCACCACGGGCGCGCGCCGCATCCCCGGCGGGCAGGCGGGCTAG
Upstream 100 bases:
>100_bases GCTTGTCCGTGGGGCTTGAAGAGGTTTCGGACATTCTCGATGATCTTCAGCAAGCTCTGTCGCCTCAGATGCGTCAGGCT GCCGAGTGAAAGGCGGGTCC
Downstream 100 bases:
>100_bases GACCCTAGCGCAATACGGCGCTGCTCCACTCCTCCAGGAAGGCTGCCTTCTTGAGCGCGTCGAGATAGACCAGCAGCCCG GGCCCCATGCGAATGCGACG
Product: transketolase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 794; Mature: 793
Protein sequence:
>794_residues MSQNIEHLRTVEQRLLWLSHWMIHNANHLRAKEDGIKIGGHQASSASMVSIMTALYFSALRPEDRVAVKPHASPIFHAMQ YLMGHQTREKMENFRGYGGVQSYPSRTKDIDDVDFSTGSVGLGVGITALASMVQDFITAKDWGGDVTPGRMVALVGDAEL DEGNIYEVLQEGWKNDLRNTWWIIDYNRQSLDGIVREGLFGRIEKIFEAFGWDVVRVKYGALQRAAFEEPGGEALRDWID ACPNVEYSALTYMGGANWRKRLMEDLGDQGAVSALIDKRSDAELAALMENLGGNCVETMADTFAAIDHDRPTCFLAYTIK GWGTPIAGHKDNHGGLMTKAQMAEWQTHMGVAEGEEWELMATVSDTKGFQAYLDQVPFFAKGARRHSDARLSVPAVAVDT SREISTQMAFGKILDDLARGDSDLAARIMTTSPDVTGTTGLGPWVNRRKLFAREAQKDAFIEHRIPSTAKWNFDPKGQHL ELGIAEMNLFLLLGAAGLSHSLWGKRVIPIGTVYDPFVHRGLDALNYACYQDARFMIVGTPSGVTLAPEGGAHQSVGTPL TGMAQDGLASFEPAFADELAVIMEWAFDYMQRDGEGDPDERTWLRDETGGSVYLRLTTKPLEQPGQRVDDAFRQGAIDGA YWLRKPGPNCSVVIAYQGAVADEAIAAAGLVGEHRRDVAVLAVTSADRLNAGWTAAQRERARGNPQAVSHVERLLGELPA HCTLITAIDGHPATLSWLGSVAGHRVVSHGVEHFGQTGTIGDLYRHFGLDRHSLARSVGELTTGARRIPGGQAG
Sequences:
>Translated_794_residues MSQNIEHLRTVEQRLLWLSHWMIHNANHLRAKEDGIKIGGHQASSASMVSIMTALYFSALRPEDRVAVKPHASPIFHAMQ YLMGHQTREKMENFRGYGGVQSYPSRTKDIDDVDFSTGSVGLGVGITALASMVQDFITAKDWGGDVTPGRMVALVGDAEL DEGNIYEVLQEGWKNDLRNTWWIIDYNRQSLDGIVREGLFGRIEKIFEAFGWDVVRVKYGALQRAAFEEPGGEALRDWID ACPNVEYSALTYMGGANWRKRLMEDLGDQGAVSALIDKRSDAELAALMENLGGNCVETMADTFAAIDHDRPTCFLAYTIK GWGTPIAGHKDNHGGLMTKAQMAEWQTHMGVAEGEEWELMATVSDTKGFQAYLDQVPFFAKGARRHSDARLSVPAVAVDT SREISTQMAFGKILDDLARGDSDLAARIMTTSPDVTGTTGLGPWVNRRKLFAREAQKDAFIEHRIPSTAKWNFDPKGQHL ELGIAEMNLFLLLGAAGLSHSLWGKRVIPIGTVYDPFVHRGLDALNYACYQDARFMIVGTPSGVTLAPEGGAHQSVGTPL TGMAQDGLASFEPAFADELAVIMEWAFDYMQRDGEGDPDERTWLRDETGGSVYLRLTTKPLEQPGQRVDDAFRQGAIDGA YWLRKPGPNCSVVIAYQGAVADEAIAAAGLVGEHRRDVAVLAVTSADRLNAGWTAAQRERARGNPQAVSHVERLLGELPA HCTLITAIDGHPATLSWLGSVAGHRVVSHGVEHFGQTGTIGDLYRHFGLDRHSLARSVGELTTGARRIPGGQAG >Mature_793_residues SQNIEHLRTVEQRLLWLSHWMIHNANHLRAKEDGIKIGGHQASSASMVSIMTALYFSALRPEDRVAVKPHASPIFHAMQY LMGHQTREKMENFRGYGGVQSYPSRTKDIDDVDFSTGSVGLGVGITALASMVQDFITAKDWGGDVTPGRMVALVGDAELD EGNIYEVLQEGWKNDLRNTWWIIDYNRQSLDGIVREGLFGRIEKIFEAFGWDVVRVKYGALQRAAFEEPGGEALRDWIDA CPNVEYSALTYMGGANWRKRLMEDLGDQGAVSALIDKRSDAELAALMENLGGNCVETMADTFAAIDHDRPTCFLAYTIKG WGTPIAGHKDNHGGLMTKAQMAEWQTHMGVAEGEEWELMATVSDTKGFQAYLDQVPFFAKGARRHSDARLSVPAVAVDTS REISTQMAFGKILDDLARGDSDLAARIMTTSPDVTGTTGLGPWVNRRKLFAREAQKDAFIEHRIPSTAKWNFDPKGQHLE LGIAEMNLFLLLGAAGLSHSLWGKRVIPIGTVYDPFVHRGLDALNYACYQDARFMIVGTPSGVTLAPEGGAHQSVGTPLT GMAQDGLASFEPAFADELAVIMEWAFDYMQRDGEGDPDERTWLRDETGGSVYLRLTTKPLEQPGQRVDDAFRQGAIDGAY WLRKPGPNCSVVIAYQGAVADEAIAAAGLVGEHRRDVAVLAVTSADRLNAGWTAAQRERARGNPQAVSHVERLLGELPAH CTLITAIDGHPATLSWLGSVAGHRVVSHGVEHFGQTGTIGDLYRHFGLDRHSLARSVGELTTGARRIPGGQAG
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=631, Percent_Identity=25.6735340729002, Blast_Score=135, Evalue=1e-32,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 86896; Mature: 86765
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQNIEHLRTVEQRLLWLSHWMIHNANHLRAKEDGIKIGGHQASSASMVSIMTALYFSAL CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCCCHHHHHHHHHHHHHHHC RPEDRVAVKPHASPIFHAMQYLMGHQTREKMENFRGYGGVQSYPSRTKDIDDVDFSTGSV CCCCCEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GLGVGITALASMVQDFITAKDWGGDVTPGRMVALVGDAELDEGNIYEVLQEGWKNDLRNT CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCE WWIIDYNRQSLDGIVREGLFGRIEKIFEAFGWDVVRVKYGALQRAAFEEPGGEALRDWID EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCHHHHHHHHH ACPNVEYSALTYMGGANWRKRLMEDLGDQGAVSALIDKRSDAELAALMENLGGNCVETMA HCCCCCCHHEEECCCCHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH DTFAAIDHDRPTCFLAYTIKGWGTPIAGHKDNHGGLMTKAQMAEWQTHMGVAEGEEWELM HHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCEEEE ATVSDTKGFQAYLDQVPFFAKGARRHSDARLSVPAVAVDTSREISTQMAFGKILDDLARG EEECCCCHHHHHHHCCCHHHHHCCCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHHCC DSDLAARIMTTSPDVTGTTGLGPWVNRRKLFAREAQKDAFIEHRIPSTAKWNFDPKGQHL CCHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE ELGIAEMNLFLLLGAAGLSHSLWGKRVIPIGTVYDPFVHRGLDALNYACYQDARFMIVGT EEEHHHHEEHHHEECCCCCHHHCCCEEEECCCHHHHHHHHCHHHHHHHHHCCCEEEEEEC PSGVTLAPEGGAHQSVGTPLTGMAQDGLASFEPAFADELAVIMEWAFDYMQRDGEGDPDE CCCCEECCCCCCCCCCCCCCCCCHHCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH RTWLRDETGGSVYLRLTTKPLEQPGQRVDDAFRQGAIDGAYWLRKPGPNCSVVIAYQGAV HCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEECCCCCCCEEEEEECCCH ADEAIAAAGLVGEHRRDVAVLAVTSADRLNAGWTAAQRERARGNPQAVSHVERLLGELPA HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC HCTLITAIDGHPATLSWLGSVAGHRVVSHGVEHFGQTGTIGDLYRHFGLDRHSLARSVGE CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH LTTGARRIPGGQAG HHCCCCCCCCCCCC >Mature Secondary Structure SQNIEHLRTVEQRLLWLSHWMIHNANHLRAKEDGIKIGGHQASSASMVSIMTALYFSAL CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCCCHHHHHHHHHHHHHHHC RPEDRVAVKPHASPIFHAMQYLMGHQTREKMENFRGYGGVQSYPSRTKDIDDVDFSTGSV CCCCCEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GLGVGITALASMVQDFITAKDWGGDVTPGRMVALVGDAELDEGNIYEVLQEGWKNDLRNT CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCE WWIIDYNRQSLDGIVREGLFGRIEKIFEAFGWDVVRVKYGALQRAAFEEPGGEALRDWID EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCHHHHHHHHH ACPNVEYSALTYMGGANWRKRLMEDLGDQGAVSALIDKRSDAELAALMENLGGNCVETMA HCCCCCCHHEEECCCCHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH DTFAAIDHDRPTCFLAYTIKGWGTPIAGHKDNHGGLMTKAQMAEWQTHMGVAEGEEWELM HHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCEEEE ATVSDTKGFQAYLDQVPFFAKGARRHSDARLSVPAVAVDTSREISTQMAFGKILDDLARG EEECCCCHHHHHHHCCCHHHHHCCCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHHCC DSDLAARIMTTSPDVTGTTGLGPWVNRRKLFAREAQKDAFIEHRIPSTAKWNFDPKGQHL CCHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE ELGIAEMNLFLLLGAAGLSHSLWGKRVIPIGTVYDPFVHRGLDALNYACYQDARFMIVGT EEEHHHHEEHHHEECCCCCHHHCCCEEEECCCHHHHHHHHCHHHHHHHHHCCCEEEEEEC PSGVTLAPEGGAHQSVGTPLTGMAQDGLASFEPAFADELAVIMEWAFDYMQRDGEGDPDE CCCCEECCCCCCCCCCCCCCCCCHHCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH RTWLRDETGGSVYLRLTTKPLEQPGQRVDDAFRQGAIDGAYWLRKPGPNCSVVIAYQGAV HCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEECCCCCCCEEEEEECCCH ADEAIAAAGLVGEHRRDVAVLAVTSADRLNAGWTAAQRERARGNPQAVSHVERLLGELPA HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC HCTLITAIDGHPATLSWLGSVAGHRVVSHGVEHFGQTGTIGDLYRHFGLDRHSLARSVGE CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH LTTGARRIPGGQAG HHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA