| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yflP [H]
Identifier: 99082572
GI number: 99082572
Start: 2875403
End: 2876383
Strand: Reverse
Name: yflP [H]
Synonym: TM1040_2732
Alternate gene names: 99082572
Gene position: 2876383-2875403 (Counterclockwise)
Preceding gene: 99082576
Following gene: 99082571
Centisome position: 89.86
GC content: 61.77
Gene sequence:
>981_bases ATGACATCTTTTGCACTGGGTCGTCGCACCCTGATGGCTGCTGCTGCTGCGGCTCTGACTTTCGGCTCTCCGGTGATGGC CGAGCAGGCGCTCGATAAGCTGCACTTTCTGATCCCCGGTGGCGCCGGTGGTGGCTGGGACGGTACCGCCCGTGGCACGG GTGAGGCGCTGACCAAATCCGGTCTTGTGGGCACCGCATCCTATGAAAACATGTCCGGCGGTGGCGGTGGCAAGGCCATC GGGTATCTCATCGAGAACGCCGAGAGCCTTGAAGACACGCTGATGGTGAACTCCACCCCGATCGTGATCCGCTCCCTGAC CGGCGTGTTCCCGCACAACTTCCGTGACCTGACGCTGGTTGCGGGCACCATTGGCGACTACGCGGCACTGGTCGTGGCCA AGGACAGCCCGATCAACAACATGGAAGAGTTCCTTGCGGCCTACCGTGAAGATCCGCGCGGCACTGCTGTCGGCGGTGGC TCGGTTCCCGGCGGCATGGATCACCTTGTTGCAGCGATGGTGATGCAGTCTGCGGGCGAAGATCCGACCGCGCTGAAATA CATCCCCTATGATGCGGGCGGCAAGGCGATGGCTGCGCTCCTGTCTGGCGAAATCAAGGCGCTCTCCACCGGGTTCTCCG AGGCGATCGCATTGGCCGAAGCCGGCGAAGTGAAAATCCTCGGCGTGACCGCGGATGAGCGCGTCCCGGCCTACGATGCA GCCGCTACTATGAAAGAGCAGGGTCTGGACACGACCTTTGTGAACTGGCGTGGGTTCTTTGGCGCGCCGGGCCTGTCTGA AGACAAGGTTGCCGCCTATCAGGACGTGCTGGCCAAGATGTATGACACCCCCGAGTGGGAAGACGTGCGCGCGCGCAACG GCTGGGTCAACATCCACAACTCCGGCGATGAGTTCAAAGCCTTCCTTGAAGGTCAGGAAAAGGTCATCGGCGACCTGATG AAGCAACTGGGCTTCCTCTAA
Upstream 100 bases:
>100_bases CGGCGAAACATCTGCTCCGTGTCAGGTTTGTGTCAGCTTGGGCCGGAATACCATGATTCATGATCGCGCTTTTGCGCGTT TGTCAAATGGGAGGAACATT
Downstream 100 bases:
>100_bases TCTTCGAGCAGTGACCTTAGGTCCGGCGCCACTCCCGGCGCCGGACCCTTTCCCGTACCCCCTCACATCAAAAACAGGAG GAGATCATGGCGCTCGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MTSFALGRRTLMAAAAAALTFGSPVMAEQALDKLHFLIPGGAGGGWDGTARGTGEALTKSGLVGTASYENMSGGGGGKAI GYLIENAESLEDTLMVNSTPIVIRSLTGVFPHNFRDLTLVAGTIGDYAALVVAKDSPINNMEEFLAAYREDPRGTAVGGG SVPGGMDHLVAAMVMQSAGEDPTALKYIPYDAGGKAMAALLSGEIKALSTGFSEAIALAEAGEVKILGVTADERVPAYDA AATMKEQGLDTTFVNWRGFFGAPGLSEDKVAAYQDVLAKMYDTPEWEDVRARNGWVNIHNSGDEFKAFLEGQEKVIGDLM KQLGFL
Sequences:
>Translated_326_residues MTSFALGRRTLMAAAAAALTFGSPVMAEQALDKLHFLIPGGAGGGWDGTARGTGEALTKSGLVGTASYENMSGGGGGKAI GYLIENAESLEDTLMVNSTPIVIRSLTGVFPHNFRDLTLVAGTIGDYAALVVAKDSPINNMEEFLAAYREDPRGTAVGGG SVPGGMDHLVAAMVMQSAGEDPTALKYIPYDAGGKAMAALLSGEIKALSTGFSEAIALAEAGEVKILGVTADERVPAYDA AATMKEQGLDTTFVNWRGFFGAPGLSEDKVAAYQDVLAKMYDTPEWEDVRARNGWVNIHNSGDEFKAFLEGQEKVIGDLM KQLGFL >Mature_325_residues TSFALGRRTLMAAAAAALTFGSPVMAEQALDKLHFLIPGGAGGGWDGTARGTGEALTKSGLVGTASYENMSGGGGGKAIG YLIENAESLEDTLMVNSTPIVIRSLTGVFPHNFRDLTLVAGTIGDYAALVVAKDSPINNMEEFLAAYREDPRGTAVGGGS VPGGMDHLVAAMVMQSAGEDPTALKYIPYDAGGKAMAALLSGEIKALSTGFSEAIALAEAGEVKILGVTADERVPAYDAA ATMKEQGLDTTFVNWRGFFGAPGLSEDKVAAYQDVLAKMYDTPEWEDVRARNGWVNIHNSGDEFKAFLEGQEKVIGDLMK QLGFL
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34100; Mature: 33969
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFALGRRTLMAAAAAALTFGSPVMAEQALDKLHFLIPGGAGGGWDGTARGTGEALTKS CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCHHHHHC GLVGTASYENMSGGGGGKAIGYLIENAESLEDTLMVNSTPIVIRSLTGVFPHNFRDLTLV CCEEECCCCCCCCCCCCHHHHHHHHCHHHHHHHEEECCCCHHHHHHHCCCCCCCCEEEEE AGTIGDYAALVVAKDSPINNMEEFLAAYREDPRGTAVGGGSVPGGMDHLVAAMVMQSAGE EECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC DPTALKYIPYDAGGKAMAALLSGEIKALSTGFSEAIALAEAGEVKILGVTADERVPAYDA CCCEEEEEECCCCHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCCHHH AATMKEQGLDTTFVNWRGFFGAPGLSEDKVAAYQDVLAKMYDTPEWEDVRARNGWVNIHN HHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECC SGDEFKAFLEGQEKVIGDLMKQLGFL CCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TSFALGRRTLMAAAAAALTFGSPVMAEQALDKLHFLIPGGAGGGWDGTARGTGEALTKS CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCHHHHHC GLVGTASYENMSGGGGGKAIGYLIENAESLEDTLMVNSTPIVIRSLTGVFPHNFRDLTLV CCEEECCCCCCCCCCCCHHHHHHHHCHHHHHHHEEECCCCHHHHHHHCCCCCCCCEEEEE AGTIGDYAALVVAKDSPINNMEEFLAAYREDPRGTAVGGGSVPGGMDHLVAAMVMQSAGE EECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC DPTALKYIPYDAGGKAMAALLSGEIKALSTGFSEAIALAEAGEVKILGVTADERVPAYDA CCCEEEEEECCCCHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCCHHH AATMKEQGLDTTFVNWRGFFGAPGLSEDKVAAYQDVLAKMYDTPEWEDVRARNGWVNIHN HHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECC SGDEFKAFLEGQEKVIGDLMKQLGFL CCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377 [H]