| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082156
Identifier: 99082156
GI number: 99082156
Start: 2437528
End: 2438043
Strand: Reverse
Name: 99082156
Synonym: TM1040_2316
Alternate gene names: NA
Gene position: 2438043-2437528 (Counterclockwise)
Preceding gene: 99082157
Following gene: 99082155
Centisome position: 76.17
GC content: 66.09
Gene sequence:
>516_bases ATGATACGTTACGCACTGAAATGCGCCGAAGGGCATGGCTTTGAGAGCTGGTTTCAATCGGCGGCTGCCTACGAGAAACT GCGCGGTGCGGGCATGGTGGCCTGCACGCTTTGCGGCTCCACCGAGGTGGAGAAGGCTTTGATGGCGCCGCGGGTGCGCC CCGGCCGCAAGGCCGCGAGCGCCCCGGCCGGCGAAGCCGTGGCGACGCCGTCCGCCGGAAACGTTCCCTCTCAGAATCTG CCGGCCCAGACCGCGCCTGCGGCGCCCGCGCCCACATCGCTTGCGGCACCGTCAAACGAGCTGGAAGCGGCGATTGCTGA GCTCAAGAAGCAGGTGGAAGCCAATTCAGATTATGTGGGCAAGGATTTTGTGAAAGAGGCGCGCGACATGCATCTGGGCG ATGCGCCTGCGCGCTCCATCCACGGAGAGGCCAAGCCCGAGGAGGCCAAGGCCCTGATCGAGGAGGGGGTGCCGGTGGTG CCGCTGCCCTTTGCGCCCACGCGCAAGACCAACTAG
Upstream 100 bases:
>100_bases TGGGGCGATGGGACAGTGAGGCAGGCTCCGAACACAACGGCAGCCCTTGCAAACCCCGCTCAACCGTATTTAATCGCGGC TCCCGAGCACGAGACTGGAC
Downstream 100 bases:
>100_bases ACGCAGGCCTCGCGCTCCAAAAGGAAGGGCGCAGGCCAAATGAGGCAGAGCAGGCAAAAGGAGACCGCCAATGCATGTGG TCGTGACAGGCAGCAGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MIRYALKCAEGHGFESWFQSAAAYEKLRGAGMVACTLCGSTEVEKALMAPRVRPGRKAASAPAGEAVATPSAGNVPSQNL PAQTAPAAPAPTSLAAPSNELEAAIAELKKQVEANSDYVGKDFVKEARDMHLGDAPARSIHGEAKPEEAKALIEEGVPVV PLPFAPTRKTN
Sequences:
>Translated_171_residues MIRYALKCAEGHGFESWFQSAAAYEKLRGAGMVACTLCGSTEVEKALMAPRVRPGRKAASAPAGEAVATPSAGNVPSQNL PAQTAPAAPAPTSLAAPSNELEAAIAELKKQVEANSDYVGKDFVKEARDMHLGDAPARSIHGEAKPEEAKALIEEGVPVV PLPFAPTRKTN >Mature_171_residues MIRYALKCAEGHGFESWFQSAAAYEKLRGAGMVACTLCGSTEVEKALMAPRVRPGRKAASAPAGEAVATPSAGNVPSQNL PAQTAPAAPAPTSLAAPSNELEAAIAELKKQVEANSDYVGKDFVKEARDMHLGDAPARSIHGEAKPEEAKALIEEGVPVV PLPFAPTRKTN
Specific function: Unknown
COG id: COG5319
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17818; Mature: 17818
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRYALKCAEGHGFESWFQSAAAYEKLRGAGMVACTLCGSTEVEKALMAPRVRPGRKAAS CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCC APAGEAVATPSAGNVPSQNLPAQTAPAAPAPTSLAAPSNELEAAIAELKKQVEANSDYVG CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC KDFVKEARDMHLGDAPARSIHGEAKPEEAKALIEEGVPVVPLPFAPTRKTN HHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCC >Mature Secondary Structure MIRYALKCAEGHGFESWFQSAAAYEKLRGAGMVACTLCGSTEVEKALMAPRVRPGRKAAS CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCC APAGEAVATPSAGNVPSQNLPAQTAPAAPAPTSLAAPSNELEAAIAELKKQVEANSDYVG CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC KDFVKEARDMHLGDAPARSIHGEAKPEEAKALIEEGVPVVPLPFAPTRKTN HHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA