| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081930
Identifier: 99081930
GI number: 99081930
Start: 2194104
End: 2194850
Strand: Reverse
Name: 99081930
Synonym: TM1040_2090
Alternate gene names: NA
Gene position: 2194850-2194104 (Counterclockwise)
Preceding gene: 99081933
Following gene: 99081929
Centisome position: 68.57
GC content: 64.79
Gene sequence:
>747_bases ATGCATCTGGATGTGCAGGATCTGAGGAATTTCTATTACCGCAGCACCTTGGGGCGCGCGGCGCAGGCCTCGATCCGGGG GCAGCTGTTGCGGATGTGGCCGGATGCCACCGGTGAGACGATCGCGGGATTTGGCTTTGCGGCGCCACTGCTGCGCCCAT ACCTGAGCGAAGCGCGCCGGCTCATGGCGCTGATGCCGGGGCCGCAGGGCGTGATGCAGTGGCCAGCCGGGATGCCCAAT GTATCCGTACTTTGCGAGGAGACCTCATGGCCGGTGGAAACCGGGCGTGTCGACCGTTTGGTGCTGCTTCATGGGCTTGA GACCTCCGAGCAGCCTTCGGCCTTGCTGGATGAGTGCTGGCGCGTGATGGGGCCGCGGGGCAGGGCGATCTTTATTGTCC CGAACCGCGCGGGGCTCTGGGCGAGATCGGACGAGACGCCGTTTGGCTACGGACGCCCTTATACGCTCACCCAGTTGGAA AACCAGTTGCGCGCACATCAGTTCACTATCGAGCAGCATGCGGCGGCGCTCTACCGATTGCCGAGTTCGCGCCGGTTCTG GCTCAAGTCGGGCGCGATGATCGAGCGGGTCGGACGGCGCTTGCCCGCGATGATGGCGGCGGGCGTGTTCCTTGTGGAGG TCTCAAAGCAGACCCACCCCCAAAAGGGCCACATGACACGCGCGCGCCGCACCAACCCGATCCGGGTACTAGAGGGGCTC TCCAACCCGATCGCGGAACCTACCTGA
Upstream 100 bases:
>100_bases CATTTGCCACGGTGGAGGGGAAAGAGGTCTGATCGGGCATGGTCATTCGCTTTCACATTGCTAGACTGCCCCAGAGTGAC CGAAGCAGTGAGCGTCTGCA
Downstream 100 bases:
>100_bases GATGAGACAGACGCCCAATCGGTGCGCCTTCTGCGAGCCCAAGCGCGCGCCTTCGGGCGGCGATCCTTGCGTCCGGGCAC CGTTGTCGACACTTCAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARRLMALMPGPQGVMQWPAGMPN VSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECWRVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLE NQLRAHQFTIEQHAAALYRLPSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL SNPIAEPT
Sequences:
>Translated_248_residues MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARRLMALMPGPQGVMQWPAGMPN VSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECWRVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLE NQLRAHQFTIEQHAAALYRLPSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL SNPIAEPT >Mature_248_residues MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARRLMALMPGPQGVMQWPAGMPN VSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECWRVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLE NQLRAHQFTIEQHAAALYRLPSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL SNPIAEPT
Specific function: Unknown
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013216 [H]
Pfam domain/function: PF08241 Methyltransf_11 [H]
EC number: NA
Molecular weight: Translated: 27917; Mature: 27917
Theoretical pI: Translated: 10.59; Mature: 10.59
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LMALMPGPQGVMQWPAGMPNVSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECW HHHHCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH RVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLENQLRAHQFTIEQHAAALYRL HHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC PSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL CCCCEEHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCHHHHHHHH SNPIAEPT CCCCCCCC >Mature Secondary Structure MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LMALMPGPQGVMQWPAGMPNVSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECW HHHHCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH RVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLENQLRAHQFTIEQHAAALYRL HHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC PSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL CCCCEEHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCHHHHHHHH SNPIAEPT CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6209404 [H]