Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081794

Identifier: 99081794

GI number: 99081794

Start: 2058558

End: 2059079

Strand: Direct

Name: 99081794

Synonym: TM1040_1954

Alternate gene names: NA

Gene position: 2058558-2059079 (Clockwise)

Preceding gene: 99081792

Following gene: 99081799

Centisome position: 64.31

GC content: 58.62

Gene sequence:

>522_bases
ATGCCAAGCGTCACTCTTTCCTATAAAACCCAAGATTTCATCGAAGCGCAGAAGCTCTCCACGCGCCAGAGTTGGCGCGA
CAAGAAACGGTGGGCGCTTTTGGCCCTCGGGAGCGTGGCGGCGGTTGCTCTCCTGACCTTTACAACTGAACCTCCGCAAC
GGGGCGAGATGCTCAAGATCGCATCTCTCCTGATGCCATCGGCGCTTATCGGCGGGCTCTGGTTGTCTCAGAGGGTATCC
ATTGCGCTTCACGGCAGGCGGGCGCTGACGGCGTCCCCCGCTCTGAGATCGGAATTTACCTATGAGGTTCAGCCAGAGGG
CCTGATTCAACGCAGCCAACACGGCGAGGCGATCGTGAAATGGACCGAGGTTCAGGCCGTCTCTGAGGATCGCAAGAGCT
GGCTGATCTACCCGGCTTTTTTGCCTGCTCAGAGCTACCTGCTGCCCAAAAGATGTCTCACAGCCGACTTCCAAGAGGCG
CTCAAGGCGCAGCTTATGGCGGCGGGCGCTCCAAGAAAATAG

Upstream 100 bases:

>100_bases
ATTGAAGGGGCCGCCTCCGAGGGAGACCTGCCGCCCTCGCGCGTTGTCTCGCGACGACGTCTCGCGTAGCGTCGGCGCAG
ATCATTTCAAAAGGCGGACC

Downstream 100 bases:

>100_bases
CGCCTTCCGTCGGCAACGGTCCTTCGTCCAAGGCCCGAACGATGTGCGCCAGAGACACAAAAAAGGCCGCCCAACTGGGC
GGCCTTTTCAATGCTTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKIASLLMPSALIGGLWLSQRVS
IALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVKWTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEA
LKAQLMAAGAPRK

Sequences:

>Translated_173_residues
MPSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKIASLLMPSALIGGLWLSQRVS
IALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVKWTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEA
LKAQLMAAGAPRK
>Mature_172_residues
PSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKIASLLMPSALIGGLWLSQRVSI
ALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVKWTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEAL
KAQLMAAGAPRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19295; Mature: 19163

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKI
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCCCCCHHHH
ASLLMPSALIGGLWLSQRVSIALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVK
HHHHHHHHHHHHHHHHHHEEEEEECCEEEECCCCHHCCCEEEECCCHHHHHCCCCCEEEE
WTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEALKAQLMAAGAPRK
HHHHHHHHHCCCCEEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKI
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCCCCCHHHH
ASLLMPSALIGGLWLSQRVSIALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVK
HHHHHHHHHHHHHHHHHHEEEEEECCEEEECCCCHHCCCEEEECCCHHHHHCCCCCEEEE
WTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEALKAQLMAAGAPRK
HHHHHHHHHCCCCEEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA