| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081771
Identifier: 99081771
GI number: 99081771
Start: 2029664
End: 2030617
Strand: Direct
Name: 99081771
Synonym: TM1040_1930
Alternate gene names: NA
Gene position: 2029664-2030617 (Clockwise)
Preceding gene: 99081770
Following gene: 99081780
Centisome position: 63.41
GC content: 63.31
Gene sequence:
>954_bases GTGAATCCCGACACCGATACCGTATTGAGGCCGCGCCCCTTGGGCGCGGTTCTCGCCATGGGGGCTGCGCTCTTGCTTGG CGGGTGTCTGGCGCTGGCGCCCGGCCCCAAGGACACGCCGCGCCCCACTCCACGCCCTGTTGCGCCGGTTTATACGCCGT CGGTGGAATCGCAGACCTTGGCGAAATACTATGCCGATCTCGAGCAGGATCTTTTGACCCGTGGGCTCTTGCGCACGGAT GGCGGCGGGCCAGAGACGCCCTATGACGCCGAAGATCTCGCAGAACGCTTTGAAACCCTTGCGTTTTACGACGAATACGC GAGCGCCACTGATGGCGGTGCTGGGGGTATGGGACGCTGGGAACGGCCCGTGCAGCTGGTCCCTGTCTTTGGCCCGTCGG TGACGCCGGCGCAGGAAGCGCGTGACCGCGCCTCCCTGACCGCCTATGCCGCCCGGCTGGCACGGATCACCGGGCATCCG ATCACCGTCGGCACGAGCGGCAACTTTACCGTGCTCTTTGCCGGTATTGATGACGCGGATTTTGTCGAAACCAAAGTGCG CCGCCTGCTGCCAAACCTGTCGGACCGGGATGTGGCACTCTTTGCGACACCGCCGCGTAAATTCTATTGTCTGGTGTTTG CAGGCGGCCCCCAGAGCGATCCGCTGAACTACACCCGCGGTGTTGCCCTGATCCGCGCGGAGCAGCCCAATTTGATGCGG GAGAGCTGTATCCACGAGGAAATCGCCCAGGGGCTTGGGCTGCGCAATGACAGCCCCAAGGCACGGCCATCGATTTTCAA CGACGACGACGAGTTTGCCCGCCTCACCAGCCATGATGAGAAACTCTTGCAGATGCTTTACGACCGGCGTCTTCGGGTCG GAATGAGCGCAGAAGAGGCCCGCCCGGCCATCGAACGCATGGCCCGGGAGGTCATGGGAGAGCTCTCAAACTAG
Upstream 100 bases:
>100_bases ATGGAAGCCGAGCTGCGCGACACGCTGGCAGCTGCCAAAGCGCGCAAGGATGGGGTCGGCGACACGGCGGCCACCTCGGT TCCAAAGTGAGCCTGCCCGC
Downstream 100 bases:
>100_bases AGAACGTCAGACCAACGGGGCCTCAACCCTGCGGGATCTCATTGACATGATCGGGCAAATGATATCCGCGCTGCACGGCC GGACGGGCCGCAATGGCCTG
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MNPDTDTVLRPRPLGAVLAMGAALLLGGCLALAPGPKDTPRPTPRPVAPVYTPSVESQTLAKYYADLEQDLLTRGLLRTD GGGPETPYDAEDLAERFETLAFYDEYASATDGGAGGMGRWERPVQLVPVFGPSVTPAQEARDRASLTAYAARLARITGHP ITVGTSGNFTVLFAGIDDADFVETKVRRLLPNLSDRDVALFATPPRKFYCLVFAGGPQSDPLNYTRGVALIRAEQPNLMR ESCIHEEIAQGLGLRNDSPKARPSIFNDDDEFARLTSHDEKLLQMLYDRRLRVGMSAEEARPAIERMAREVMGELSN
Sequences:
>Translated_317_residues MNPDTDTVLRPRPLGAVLAMGAALLLGGCLALAPGPKDTPRPTPRPVAPVYTPSVESQTLAKYYADLEQDLLTRGLLRTD GGGPETPYDAEDLAERFETLAFYDEYASATDGGAGGMGRWERPVQLVPVFGPSVTPAQEARDRASLTAYAARLARITGHP ITVGTSGNFTVLFAGIDDADFVETKVRRLLPNLSDRDVALFATPPRKFYCLVFAGGPQSDPLNYTRGVALIRAEQPNLMR ESCIHEEIAQGLGLRNDSPKARPSIFNDDDEFARLTSHDEKLLQMLYDRRLRVGMSAEEARPAIERMAREVMGELSN >Mature_317_residues MNPDTDTVLRPRPLGAVLAMGAALLLGGCLALAPGPKDTPRPTPRPVAPVYTPSVESQTLAKYYADLEQDLLTRGLLRTD GGGPETPYDAEDLAERFETLAFYDEYASATDGGAGGMGRWERPVQLVPVFGPSVTPAQEARDRASLTAYAARLARITGHP ITVGTSGNFTVLFAGIDDADFVETKVRRLLPNLSDRDVALFATPPRKFYCLVFAGGPQSDPLNYTRGVALIRAEQPNLMR ESCIHEEIAQGLGLRNDSPKARPSIFNDDDEFARLTSHDEKLLQMLYDRRLRVGMSAEEARPAIERMAREVMGELSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34591; Mature: 34591
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPDTDTVLRPRPLGAVLAMGAALLLGGCLALAPGPKDTPRPTPRPVAPVYTPSVESQTL CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH AKYYADLEQDLLTRGLLRTDGGGPETPYDAEDLAERFETLAFYDEYASATDGGAGGMGRW HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC ERPVQLVPVFGPSVTPAQEARDRASLTAYAARLARITGHPITVGTSGNFTVLFAGIDDAD CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCHH FVETKVRRLLPNLSDRDVALFATPPRKFYCLVFAGGPQSDPLNYTRGVALIRAEQPNLMR HHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCHHCCEEEEEECCCCHHH ESCIHEEIAQGLGLRNDSPKARPSIFNDDDEFARLTSHDEKLLQMLYDRRLRVGMSAEEA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RPAIERMAREVMGELSN HHHHHHHHHHHHHHCCC >Mature Secondary Structure MNPDTDTVLRPRPLGAVLAMGAALLLGGCLALAPGPKDTPRPTPRPVAPVYTPSVESQTL CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH AKYYADLEQDLLTRGLLRTDGGGPETPYDAEDLAERFETLAFYDEYASATDGGAGGMGRW HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC ERPVQLVPVFGPSVTPAQEARDRASLTAYAARLARITGHPITVGTSGNFTVLFAGIDDAD CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCHH FVETKVRRLLPNLSDRDVALFATPPRKFYCLVFAGGPQSDPLNYTRGVALIRAEQPNLMR HHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCHHCCEEEEEECCCCHHH ESCIHEEIAQGLGLRNDSPKARPSIFNDDDEFARLTSHDEKLLQMLYDRRLRVGMSAEEA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RPAIERMAREVMGELSN HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA