Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081780

Identifier: 99081780

GI number: 99081780

Start: 2043063

End: 2044004

Strand: Direct

Name: 99081780

Synonym: TM1040_1939

Alternate gene names: NA

Gene position: 2043063-2044004 (Clockwise)

Preceding gene: 99081771

Following gene: 99081785

Centisome position: 63.83

GC content: 64.65

Gene sequence:

>942_bases
ATGGCAGTGATCCGTATCAACGCAGTCGGCGACACGCCGGTGGTGCACGCGCGCCCCGGCCCCCTCGAGGAGGAGATCGC
ACGCCTTGGACCGCTCGAGGGTCCGGTGATCGTCATGATCCACGGCTACAGCTACAAGCCGGGCCTGCCCGCGCATTGCC
CACATCGCCACATCTTGTCTCTCGATCCCCACCACATGCCCTGGCTTGCGCCCTCCTGGCCGCGCCAGCTTGGTTTTGGC
ATGGGGCGCGGTGACGAAGGGCTTGCGGTGGCCTTTGGCTGGAACTCACGTGGGAGACTCGCCGCCGCGCAAGCCCGCGC
GATCGACGCAGGGCGCGCATTGGCAAGGCTTGTCGAGGTGCTGCATCGCCAAGCACCGGCACGCCCAATCCACCTGATCG
GGCATTCTCTCGGCTCAGAGGTGGTGCTCAGGGCGCTCAAGGATCTGCCGGTTGGTGCCGTTGAGAGGGTGATTTCTCTG
AGCGGGGCCAGTTATCAGAGCGTGGCCACTTCAGCGCTTACGACGCCCGCTGGACGCGCTGTCGAGTTTTTCAACATCAC
CAGCCGCGAAAACGATACTTTTGATTTCCTGTTCGAAACCCTGACACGCAGGCCCAATCGCAATGATCGCGCCATCAGCA
AAGGCATCTCTGCCCCCAATGCGGTCACGCTGCAGATCGACTGCCTCGAGACGCTGGAGCAGCTCTCGCGGATGGGCCAC
CCCCTCGGCCTGCCGGAGCGACGGGTGTGCCATCGGTCCACATATCTGCGGCCAGGGGCCTTGCGCCTCTACCGCCAGCT
GATGCGGCATCCGGAACAAATACCTCTCACCCGCATCCAAAGCTCTGTACCCACAGCGCCCGAACCGCGCTGGTCCCGTC
TCTTGCGCTTGCGCCCGCAGCCCGGTGCGGTGCCGATTTGGCAGCGGATCGAGCTGGGCTGA

Upstream 100 bases:

>100_bases
GCGGCATCTGCGAAGACGTCACCGCACCGTTACCAAGCCGTCACCCTGTCGTCACCACGCCCAGCTAGAGCAAAGCCAAA
GTCATGTTCTGGGGGCAGTT

Downstream 100 bases:

>100_bases
GCCTACGGCGCCCTTGATGCGAGCCTCCGGCGCGTCGGGAGCGCGCCCGCACCGTTTTGTCAGGGCAGAGCCAGGCTGGC
GAAGGATCATGAGGCCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAVIRINAVGDTPVVHARPGPLEEEIARLGPLEGPVIVMIHGYSYKPGLPAHCPHRHILSLDPHHMPWLAPSWPRQLGFG
MGRGDEGLAVAFGWNSRGRLAAAQARAIDAGRALARLVEVLHRQAPARPIHLIGHSLGSEVVLRALKDLPVGAVERVISL
SGASYQSVATSALTTPAGRAVEFFNITSRENDTFDFLFETLTRRPNRNDRAISKGISAPNAVTLQIDCLETLEQLSRMGH
PLGLPERRVCHRSTYLRPGALRLYRQLMRHPEQIPLTRIQSSVPTAPEPRWSRLLRLRPQPGAVPIWQRIELG

Sequences:

>Translated_313_residues
MAVIRINAVGDTPVVHARPGPLEEEIARLGPLEGPVIVMIHGYSYKPGLPAHCPHRHILSLDPHHMPWLAPSWPRQLGFG
MGRGDEGLAVAFGWNSRGRLAAAQARAIDAGRALARLVEVLHRQAPARPIHLIGHSLGSEVVLRALKDLPVGAVERVISL
SGASYQSVATSALTTPAGRAVEFFNITSRENDTFDFLFETLTRRPNRNDRAISKGISAPNAVTLQIDCLETLEQLSRMGH
PLGLPERRVCHRSTYLRPGALRLYRQLMRHPEQIPLTRIQSSVPTAPEPRWSRLLRLRPQPGAVPIWQRIELG
>Mature_312_residues
AVIRINAVGDTPVVHARPGPLEEEIARLGPLEGPVIVMIHGYSYKPGLPAHCPHRHILSLDPHHMPWLAPSWPRQLGFGM
GRGDEGLAVAFGWNSRGRLAAAQARAIDAGRALARLVEVLHRQAPARPIHLIGHSLGSEVVLRALKDLPVGAVERVISLS
GASYQSVATSALTTPAGRAVEFFNITSRENDTFDFLFETLTRRPNRNDRAISKGISAPNAVTLQIDCLETLEQLSRMGHP
LGLPERRVCHRSTYLRPGALRLYRQLMRHPEQIPLTRIQSSVPTAPEPRWSRLLRLRPQPGAVPIWQRIELG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34587; Mature: 34455

Theoretical pI: Translated: 11.12; Mature: 11.12

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIRINAVGDTPVVHARPGPLEEEIARLGPLEGPVIVMIHGYSYKPGLPAHCPHRHILS
CEEEEEEECCCCCEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
LDPHHMPWLAPSWPRQLGFGMGRGDEGLAVAFGWNSRGRLAAAQARAIDAGRALARLVEV
CCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHH
LHRQAPARPIHLIGHSLGSEVVLRALKDLPVGAVERVISLSGASYQSVATSALTTPAGRA
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCE
VEFFNITSRENDTFDFLFETLTRRPNRNDRAISKGISAPNAVTLQIDCLETLEQLSRMGH
EEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCC
PLGLPERRVCHRSTYLRPGALRLYRQLMRHPEQIPLTRIQSSVPTAPEPRWSRLLRLRPQ
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHEECCCC
PGAVPIWQRIELG
CCCCCHHHHCCCC
>Mature Secondary Structure 
AVIRINAVGDTPVVHARPGPLEEEIARLGPLEGPVIVMIHGYSYKPGLPAHCPHRHILS
EEEEEEECCCCCEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
LDPHHMPWLAPSWPRQLGFGMGRGDEGLAVAFGWNSRGRLAAAQARAIDAGRALARLVEV
CCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHH
LHRQAPARPIHLIGHSLGSEVVLRALKDLPVGAVERVISLSGASYQSVATSALTTPAGRA
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCE
VEFFNITSRENDTFDFLFETLTRRPNRNDRAISKGISAPNAVTLQIDCLETLEQLSRMGH
EEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCC
PLGLPERRVCHRSTYLRPGALRLYRQLMRHPEQIPLTRIQSSVPTAPEPRWSRLLRLRPQ
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHEECCCC
PGAVPIWQRIELG
CCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA