Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081722

Identifier: 99081722

GI number: 99081722

Start: 1980254

End: 1980664

Strand: Direct

Name: 99081722

Synonym: TM1040_1881

Alternate gene names: NA

Gene position: 1980254-1980664 (Clockwise)

Preceding gene: 99081720

Following gene: 99081726

Centisome position: 61.86

GC content: 50.61

Gene sequence:

>411_bases
ATGCGAGCCGTTTCTTCCATGACAGACCTGTATTTGACCGAGCCTGACTTCGAAGCTGAGATTACGATCCTTACCGAAGA
GCAGCGAGGGCGCCAAACGCCGCCACACAACTACATTCGCTGGGATTTCGGCTATGCAGAGGACAATCCTCTAGAGCCAG
AGCGCAATCTGGATGCAGAAATCTACATGATTTGGCCAAATTTTCTGGATACCGAAGGCACACCTATTCAGAAGGGCATC
CCGCTTGTAGGAACATACAAGGCTTGGATGCACATCTTGGTGAGAGAAATGGTGTGCTACCACCGGAAACGGATATCGGT
TGGTCTAAAATTCAATTGCTATGAAGGCGGCCAGATCGTGGCAAGAGGGGTCGTAACAGAGCTTCGGGCCATTTCGCTCA
ACGGCAACTAA

Upstream 100 bases:

>100_bases
TGATCGGGCACAGGGAGAGGAGTAAAAGGACAGCTTTCAAATCGGGGTGGTCTGCTTTGAGCCCTTCACAGCTATAAAGC
GTTGTTCGCTGGCTCGGATT

Downstream 100 bases:

>100_bases
ATACCGCTTTCCGACCACAATGACTTTCAGGCATGTCTATAAAAAACCGCCCCTCTGCGGATGCAGGGGGCGGCTAGGCG
TGACTAACAGTGCAGGGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MRAVSSMTDLYLTEPDFEAEITILTEEQRGRQTPPHNYIRWDFGYAEDNPLEPERNLDAEIYMIWPNFLDTEGTPIQKGI
PLVGTYKAWMHILVREMVCYHRKRISVGLKFNCYEGGQIVARGVVTELRAISLNGN

Sequences:

>Translated_136_residues
MRAVSSMTDLYLTEPDFEAEITILTEEQRGRQTPPHNYIRWDFGYAEDNPLEPERNLDAEIYMIWPNFLDTEGTPIQKGI
PLVGTYKAWMHILVREMVCYHRKRISVGLKFNCYEGGQIVARGVVTELRAISLNGN
>Mature_136_residues
MRAVSSMTDLYLTEPDFEAEITILTEEQRGRQTPPHNYIRWDFGYAEDNPLEPERNLDAEIYMIWPNFLDTEGTPIQKGI
PLVGTYKAWMHILVREMVCYHRKRISVGLKFNCYEGGQIVARGVVTELRAISLNGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15722; Mature: 15722

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAVSSMTDLYLTEPDFEAEITILTEEQRGRQTPPHNYIRWDFGYAEDNPLEPERNLDAE
CCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEE
IYMIWPNFLDTEGTPIQKGIPLVGTYKAWMHILVREMVCYHRKRISVGLKFNCYEGGQIV
EEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHEEECEEEEEECCCEEE
ARGVVTELRAISLNGN
EHHHHHEEEEEEECCC
>Mature Secondary Structure
MRAVSSMTDLYLTEPDFEAEITILTEEQRGRQTPPHNYIRWDFGYAEDNPLEPERNLDAE
CCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEE
IYMIWPNFLDTEGTPIQKGIPLVGTYKAWMHILVREMVCYHRKRISVGLKFNCYEGGQIV
EEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHEEECEEEEEECCCEEE
ARGVVTELRAISLNGN
EHHHHHEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA