Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081645

Identifier: 99081645

GI number: 99081645

Start: 1895802

End: 1896818

Strand: Direct

Name: 99081645

Synonym: TM1040_1804

Alternate gene names: NA

Gene position: 1895802-1896818 (Clockwise)

Preceding gene: 99081640

Following gene: 99081648

Centisome position: 59.23

GC content: 63.91

Gene sequence:

>1017_bases
GTGACCGACGTGACCAACGACACCCTTTCCCATTATGCGCTCCCGGCCTACCCGGCCGAGCAGTTTTGCGTGGACATCGG
CGCCAACGCGGGCGACCCGATTGGGATTCTGGATGATTTGGTGATGGATGACATCTACGAGCTCACCAGTGATGCGCGCC
TGCGACGGCTCGCCTTTGGGGTGTCAACAGAGGGCACGATCACCCTCCACTCCGAGAGCGAGATGGGCCAGGACGGGGCG
CGACTGCATCTGGATTGCGCCGTCACACTGATGCCCGACCTGGGCAGCGCCATCGAGGCGCTGATCGCGGTTGAGGTGGA
TAATGAGGGGTTGATAGCCCGGCTCTACCTGATCCCGCAGGCCCCACTTGCGCAGGGCACGGGCTATCGTCTGGTGCGCG
CCAGCCGCGAGCCGGTCTGGACACGTTTGGCGCAACTCAGCTGTGTGGCCTTTTCGCGCGGCACGCATATCACGATGGGC
ACGGGAGAGCAGCGCCCGATTGAGATGCTGCGCGCCGGCGACCGGGTCTTGACCCGCAACAGTGGCGCGCGCCGCATCAC
CTGGGTGGGTCACACCACCGTCCGCGCGGTCGGAGAAATGGCGCCCATCCTGATCCGCCAAGGGGCGCTCAACAATGCGC
GCGACCTTTTGGTGAGCCCGGACCACCGGCTCATGATCTATCAGCGATCAGATGCGCTCGGGGCGGGACGGAATGAATTG
ATGATCCGCGCCCGCGATCTTGTGAATGGCGACAGCGTGGTGGTTCAGGACGGCGGCTTTGTGGACTACTATCAGATCCT
GTTTGACCGCCATCACATCATCTATGCCGAGGGCATTGCCGCGGAATCGATGCTGGTGGACCCGGTCACGCGTCCAGCCC
TCCCCGAAGAGGTGCAGCAACGTCTGACGCAGCCCCGCCGGCATGGAACGCGCGGCGATCACGGCTTGGAAATCCGGCGC
CCAATGCTCAGTCACCCAGACACCGTAGACTTGCTCAAACGCGCCTCGTTGCGCTGA

Upstream 100 bases:

>100_bases
CGCCCGTTTCTTGCCCAAGTGTGAACCTAGTCTTTACCACGAAAGGCGCAGTGTAAGTGCGCGCGCATCCGGCCCGACAA
CAGTGATTGACCCGAAGACA

Downstream 100 bases:

>100_bases
CCGCCGTTGCCTCGGACGTGACGGCGCACGTGCGCAAAGTGTCAATTTTACGCCTTTCAGGATAGCGGGACACGTCCGTC
AGGACCGGCCTTGCTGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: Type I Secretion Target Repeat-Containing Protein; Hemagglutinin-Related Protein; Peptidase Metallopeptidase; Peroxidase; Bifunctional Hemolysin/Adenylate Cyclase

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFGVSTEGTITLHSESEMGQDGA
RLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQAPLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMG
TGEQRPIEMLRAGDRVLTRNSGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNEL
MIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQRLTQPRRHGTRGDHGLEIRR
PMLSHPDTVDLLKRASLR

Sequences:

>Translated_338_residues
MTDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFGVSTEGTITLHSESEMGQDGA
RLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQAPLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMG
TGEQRPIEMLRAGDRVLTRNSGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNEL
MIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQRLTQPRRHGTRGDHGLEIRR
PMLSHPDTVDLLKRASLR
>Mature_337_residues
TDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFGVSTEGTITLHSESEMGQDGAR
LHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQAPLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMGT
GEQRPIEMLRAGDRVLTRNSGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNELM
IRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQRLTQPRRHGTRGDHGLEIRRP
MLSHPDTVDLLKRASLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37301; Mature: 37170

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFG
CCCCCCCHHHHCCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
VSTEGTITLHSESEMGQDGARLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQ
CCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCHHHHEEEEEEEEECCCCEEEEEEEECC
APLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMGTGEQRPIEMLRAGDRVLTRN
CCCCCCCCEEEEECCCCHHHHHHHHHHHEEECCCCEEEECCCCCCHHHHHHCCCEEEECC
SGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNEL
CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCE
MIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQ
EEEEECCCCCCEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCHHHHHH
RLTQPRRHGTRGDHGLEIRRPMLSHPDTVDLLKRASLR
HHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFG
CCCCCCHHHHCCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
VSTEGTITLHSESEMGQDGARLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQ
CCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCHHHHEEEEEEEEECCCCEEEEEEEECC
APLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMGTGEQRPIEMLRAGDRVLTRN
CCCCCCCCEEEEECCCCHHHHHHHHHHHEEECCCCEEEECCCCCCHHHHHHCCCEEEECC
SGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNEL
CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCE
MIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQ
EEEEECCCCCCEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCHHHHHH
RLTQPRRHGTRGDHGLEIRRPMLSHPDTVDLLKRASLR
HHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA