Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081545

Identifier: 99081545

GI number: 99081545

Start: 1799623

End: 1800708

Strand: Reverse

Name: 99081545

Synonym: TM1040_1704

Alternate gene names: NA

Gene position: 1800708-1799623 (Counterclockwise)

Preceding gene: 99081546

Following gene: 99081543

Centisome position: 56.26

GC content: 61.69

Gene sequence:

>1086_bases
ATGTTTCTCAAGCGGCTGAGTAAATCAGTTCTGGGAGTGTTCGGGCGGCGTCGGCTGCTGTCCGCGCACTCGTCAGAGAC
CGCTTCGCGCGGTCCGCAATCTCATGTGATCATCCTTGACGGCACTATGTCGACACTCGAACCGGGGCGTGAAACCCATG
CGGGAATGGCCTATCGGCTCTGCAAGGAAATGGGGCCGCGGGTCTCTGTTTATTACGAGGCTGGCGTGCAGTGGAACGCC
TGGAGCAAGACCGCCGATGTGATGGTTGGGCGCGGCATCAACCGCAAGATCCGCAGCGCCTATGGCTATCTCGCCTCGCG
CTATCGCCCCGGCGACAAGATCTATCTTCTGGGCTACTCGCGCGGCGCCTACGCGGCGCGTTCCCTTGCCGGCATGCTCG
GCGCAGTTGGGCTGGTGAAAACAGAACACGCCACCGTGCGCCACATCCGCACCGCCTATCGCCACTACCAGATGGGAAGC
GGCCATGAGGTACGACAAGCCTTTCGCAACGCTCATTGCCACCCGGAGATCCAGATTGAGATGGTCGGAGCCTGGGATAC
CGTGAAGGCGCTGGGCATTCGCCTACCGATCCTGTGGCGCTGGTCGCAAGTGCAACACGCGTTCCATGATCAGAAACTGG
GGGATCACGTCCGGGCGGGCTATCACGCGTTGGCCATGGACGAGACGCGCGAAGCCTATGCACCGGTGCTGTGGCAAACC
TCGCCAGACTATTCAGGCCAGCTTGAGCAGGTCTGGTTTCGGGGCTCTCATGGCGATGTTGGCGGTCAGATTGGCGAATG
TGACGCCGCCCGCCCGCTGGCCAACCTGTCGTTGGTCTGGATGCTGGAACGCGCAGAGATGTCGGGCCTGCCGCTGCCGC
GGGACTGGCGGATGCGTTTTCCGGTGGATCCCGATGCACCTTCGGTGGGCACATGGTCGGGCTGGGGCAAGATCTTTCTG
ATCCGTAGCCGACGCAAGATCGGTCTCGACCCGAGTGAGCGCGTGCATCCCAGTGTTCAGATAGCAAAAAAGCCCAACAA
GACAGCCGGGTGGCTCGGTATCTTTATGCGCCAAACCCGCCTCTAG

Upstream 100 bases:

>100_bases
GCAGCAGTGGCCAATGCGGTTCAGGATGCGCTCTGGGATCAGGGCATCCGGCAGGTGGATATGCCGTTCACGCCGGTCAA
ACTTTGGGAGTTGATGAGGG

Downstream 100 bases:

>100_bases
GCGCCGCAGTGCAGGCCTGTTCTAGAGCTGTACTGGCCGGAGCGTTTTGACCATTTCTGTCGCCGTTGAGAACCCAAAAA
GCGGCGCCAGAATACCAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRLCKEMGPRVSVYYEAGVQWNA
WSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYSRGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGS
GHEVRQAFRNAHCHPEIQIEMVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT
SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRFPVDPDAPSVGTWSGWGKIFL
IRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTRL

Sequences:

>Translated_361_residues
MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRLCKEMGPRVSVYYEAGVQWNA
WSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYSRGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGS
GHEVRQAFRNAHCHPEIQIEMVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT
SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRFPVDPDAPSVGTWSGWGKIFL
IRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTRL
>Mature_361_residues
MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRLCKEMGPRVSVYYEAGVQWNA
WSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYSRGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGS
GHEVRQAFRNAHCHPEIQIEMVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT
SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRFPVDPDAPSVGTWSGWGKIFL
IRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTRL

Specific function: Unknown

COG id: COG3673

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6320812, Length=235, Percent_Identity=25.531914893617, Blast_Score=76, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40673; Mature: 40673

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRL
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHH
CKEMGPRVSVYYEAGVQWNAWSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYS
HHHHCCCEEEEEECCEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
RGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGSGHEVRQAFRNAHCHPEIQIE
CCHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEE
MVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT
EECCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHCCEEECC
SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRF
CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHCEEEEEEEEHHHHCCCCCCCCCCEEC
PVDPDAPSVGTWSGWGKIFLIRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTR
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHC
L
C
>Mature Secondary Structure
MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRL
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHH
CKEMGPRVSVYYEAGVQWNAWSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYS
HHHHCCCEEEEEECCEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
RGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGSGHEVRQAFRNAHCHPEIQIE
CCHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEE
MVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT
EECCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHCCEEECC
SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRF
CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHCEEEEEEEEHHHHCCCCCCCCCCEEC
PVDPDAPSVGTWSGWGKIFLIRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTR
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA