Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081509

Identifier: 99081509

GI number: 99081509

Start: 1767772

End: 1768983

Strand: Reverse

Name: 99081509

Synonym: TM1040_1668

Alternate gene names: NA

Gene position: 1768983-1767772 (Counterclockwise)

Preceding gene: 99081510

Following gene: 99081508

Centisome position: 55.26

GC content: 62.54

Gene sequence:

>1212_bases
ATGGCTGAAGAAAACACCAGGTCGGTGGCGGAACTCGCTGCCGAAATCAAAGCCGACCACGCCAAGAGCGTTGATGCCGT
CAAGGCCATTGCCGAGGAAGCCCTGGGCAAAGCTCAGAGCGGCGAAAAGTTGGCGAACGACCTGAAGGAAAAGGCCGACG
AGGCCCTGACCGAAATGAACGGCTTCAAAGCGTCTCTGGACGCGCTGGAGCAAAAGCTGGCGCGCGGCGCGGGCGGCGAA
GGTAGCGACGGCGAAAAGTCGCTGGGACAGCGCTTCGTTGAGAGCGAGGGCTTCAAGTCGTTCAAGGACGGCGGCTTTGA
CCGTCACAGCAAGGCGAAGCTGGAAACCAAGGCGACCCTGACCCTGGCGACCACTGACACAGATGGCGCCGTTGGCGATG
GTGTAGCCCCGACCCGCCTGCCGGGCATCCAGGGCTTGCCGCAGCGCCGCCTGACCATCCGCGATCTGCTGGCGCAGGGC
CGCATGGATGGCAACACCATCGAGTACGTGCAGGAGACCGGTTTCAACAACAACGCGGCTCCGGTGGCCGAAGGCGCTGC
AAAGCCGTCCTCAGATATCAAGCTGGACGTGAAAACCACCACTGCCAAGGTGATCGCGCACTGGATGAAGGCATCGCGCC
AGGCGCTGGATGATGTTTCCGCCCTGCGCTCGATGATCGACCAGCGCCTGCTGTTCGGCCTGGCGCTGGCGGAAGAAAAC
CAGCTTTTGAACGGTGACGGCACCGGCCAGAACCTGTCCGGCCTGATCACCAACGCCACAGCCTATTCGGCGGCGTTTGC
GCCGGCATCCGAGACCGCAATCGACAAGATGCGCCTCGCCATGCTGCAAGCGGCTCTGGCTGAATACCCGGCAACGGGAC
ACGTGATGCACCCGACCGACTGGGCACGGATCGAGCTGACCAAGGACGGCAACGCCAACTACATCATCGGCAAGCCGCAA
GGCACCATCGCGCCGACCCTCTGGGGCCTGCCGGTTGTGGCTACACAGGCGATCACCGTGGACAAGTTCCTGACCGGTGC
GTTCAACATGGGTGCTCAGATCTTCGACCGCTGGGATGCGACGGTCGAAACCGGCTACGAGAATGACGACTTCACCAAGA
ACCTCGTCACCATCCTGGCCGAGGAGCGTCTGGCGCTGGCGATATTCCGCCCCGAAGCGTTTATCTACGGCGATCTGGGC
TACGTGGCCTAA

Upstream 100 bases:

>100_bases
CATCCACCTGAAAGGGCCGGGGGAACCGGCAGCGGCAACTGAAGCCCGTGCATTGCTTGAAGCACTGCGGGCATAAACCC
ACCTGACATAGGAGCCTATC

Downstream 100 bases:

>100_bases
GCGTCGGCTGATCAAGGAGGGCGGGGAAGCTCGCCCTCTCTATGAGCCGAAAGGAGACCGTCATGGAAAAGTATGAAGTC
ATGCGCCGCCACCAAGGCGA

Product: phage major capsid protein, HK97

Products: NA

Alternate protein names: HK97 Family Phage Capsid Protein; Phage Capsid Protein HK; Head Protein; Phage Capsid Protein; Phage Head; Phage Head Protein; Capsid Protein; Phage Capsid Family; Prophage LambdaSo; Phage Protein; Capsid Protein HK; Serine/Arginine Repetitive Matrix; Phage Capsid Subunit

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MAEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMNGFKASLDALEQKLARGAGGE
GSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATLTLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQG
RMDGNTIEYVQETGFNNNAAPVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEEN
QLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTDWARIELTKDGNANYIIGKPQ
GTIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDATVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLG
YVA

Sequences:

>Translated_403_residues
MAEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMNGFKASLDALEQKLARGAGGE
GSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATLTLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQG
RMDGNTIEYVQETGFNNNAAPVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEEN
QLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTDWARIELTKDGNANYIIGKPQ
GTIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDATVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLG
YVA
>Mature_402_residues
AEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMNGFKASLDALEQKLARGAGGEG
SDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATLTLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQGR
MDGNTIEYVQETGFNNNAAPVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEENQ
LLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTDWARIELTKDGNANYIIGKPQG
TIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDATVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLGY
VA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43037; Mature: 42906

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GFKASLDALEQKLARGAGGEGSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATL
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEEE
TLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQGRMDGNTIEYVQETGFNNNAA
EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC
PVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEEN
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTD
CEECCCCCCCCCCHHEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC
WARIELTKDGNANYIIGKPQGTIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDA
CEEEEEEECCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLGYVA
HHCCCCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHCC
>Mature Secondary Structure 
AEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GFKASLDALEQKLARGAGGEGSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATL
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEEE
TLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQGRMDGNTIEYVQETGFNNNAA
EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC
PVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEEN
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTD
CEECCCCCCCCCCHHEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC
WARIELTKDGNANYIIGKPQGTIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDA
CEEEEEEECCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLGYVA
HHCCCCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA