| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081366
Identifier: 99081366
GI number: 99081366
Start: 1628514
End: 1629239
Strand: Reverse
Name: 99081366
Synonym: TM1040_1525
Alternate gene names: NA
Gene position: 1629239-1628514 (Counterclockwise)
Preceding gene: 99081367
Following gene: 99081365
Centisome position: 50.9
GC content: 64.74
Gene sequence:
>726_bases ATGAAAAGCGAAGCCTTTCATTATGGCGATGGCATAGATCAGTTCGTCGGCCACTTGGTATGCGACGACAGTCGAGAGGA GCCCGCGCCCTGCGTCCTGATCGCGCCCGCCTTTGGCGGCTTGAGCGATTTTGAACGCGCCCGTGCCGAAGACCTCGCCA AGCTCGGCTATGTCGCTCTCGCGGTTGATTACTACGGAGACGGCAAGCGCGCGGCCTCGCCAGAGGAGGCGCAGCACCTC ATGGCAGGTTTGCAGGCGGATCGCACCGTGCTCGCGCGGCGTATGGGGGCAGCGCTGGAGGCCGCGCGTGCCTTGCCGCA GGTGGATGCGGGGCGCATCGGCGCAATGGGCTACTGCTTGGGCGGCAAGGCCGTGCTGGATCTGGCGCGCACAGGGGCCG ATCTGCGTGCGTGTGTGCCGCTGCATGGCGTCTATGACCGCCCCAATTTTGAGACCCAGACGATGCGCGCGGCGGTTCTG GTGCTGCACGGTTGGGACGACCCGCTTGCCCCGCCTTCTGCGCTCGAGGCGCTTGCGGCTGAACTGAACGAACACTGCGC GGATTGGCAGGTGCTCGGATTTGGACACACCGGGCATGCGTTCACCAACCCCAACGCCAAGGACAGCGCTGGTGGCATGA TCTACAGCGCCACCGCAAGTTCACGGGCCTGGACTGCGCTGACGGGATTTCTGGCTGAGACGTTTGAAGGCGCCGCAAGT GCATAG
Upstream 100 bases:
>100_bases GTCCAAGGCTCCGATGAATACGAATAGCGAAAGGCCAGTGTCCCCGTGACACTGGCCTTTTTCTTTCTCAACTGCTGGGT GTGTTAGGAGGGAACAGCAC
Downstream 100 bases:
>100_bases CAGAAATGCATAATTTGCAGTGCCGATGCGCGCCAATCCACCATAGACTTTCCATGTGACAAACTGTTCAAGCGAAGTGG AAGGACGCCTCATGACGATA
Product: dienelactone hydrolase
Products: NA
Alternate protein names: Dienelactone Hydrolase Family Protein; Carboxymethylenebutenolidase; Dienelactone Hydrolase Family; Hydrolase; Dienelactone Hydrolases; Dienelactone Hydrolase Protein; Dienelactone Hydrolase-Related; Transposase Remnant
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MKSEAFHYGDGIDQFVGHLVCDDSREEPAPCVLIAPAFGGLSDFERARAEDLAKLGYVALAVDYYGDGKRAASPEEAQHL MAGLQADRTVLARRMGAALEAARALPQVDAGRIGAMGYCLGGKAVLDLARTGADLRACVPLHGVYDRPNFETQTMRAAVL VLHGWDDPLAPPSALEALAAELNEHCADWQVLGFGHTGHAFTNPNAKDSAGGMIYSATASSRAWTALTGFLAETFEGAAS A
Sequences:
>Translated_241_residues MKSEAFHYGDGIDQFVGHLVCDDSREEPAPCVLIAPAFGGLSDFERARAEDLAKLGYVALAVDYYGDGKRAASPEEAQHL MAGLQADRTVLARRMGAALEAARALPQVDAGRIGAMGYCLGGKAVLDLARTGADLRACVPLHGVYDRPNFETQTMRAAVL VLHGWDDPLAPPSALEALAAELNEHCADWQVLGFGHTGHAFTNPNAKDSAGGMIYSATASSRAWTALTGFLAETFEGAAS A >Mature_241_residues MKSEAFHYGDGIDQFVGHLVCDDSREEPAPCVLIAPAFGGLSDFERARAEDLAKLGYVALAVDYYGDGKRAASPEEAQHL MAGLQADRTVLARRMGAALEAARALPQVDAGRIGAMGYCLGGKAVLDLARTGADLRACVPLHGVYDRPNFETQTMRAAVL VLHGWDDPLAPPSALEALAAELNEHCADWQVLGFGHTGHAFTNPNAKDSAGGMIYSATASSRAWTALTGFLAETFEGAAS A
Specific function: Unknown
COG id: COG0412
COG function: function code Q; Dienelactone hydrolase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI17536419, Length=207, Percent_Identity=37.6811594202899, Blast_Score=125, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17532655, Length=228, Percent_Identity=32.8947368421053, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17532653, Length=222, Percent_Identity=36.4864864864865, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17536415, Length=206, Percent_Identity=31.5533980582524, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI193204305, Length=212, Percent_Identity=30.188679245283, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17534829, Length=159, Percent_Identity=32.0754716981132, Blast_Score=74, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25406; Mature: 25406
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSEAFHYGDGIDQFVGHLVCDDSREEPAPCVLIAPAFGGLSDFERARAEDLAKLGYVAL CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEE AVDYYGDGKRAASPEEAQHLMAGLQADRTVLARRMGAALEAARALPQVDAGRIGAMGYCL EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC GGKAVLDLARTGADLRACVPLHGVYDRPNFETQTMRAAVLVLHGWDDPLAPPSALEALAA CCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHEEEEEEEECCCCCCCCHHHHHHHHH ELNEHCADWQVLGFGHTGHAFTNPNAKDSAGGMIYSATASSRAWTALTGFLAETFEGAAS HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC A C >Mature Secondary Structure MKSEAFHYGDGIDQFVGHLVCDDSREEPAPCVLIAPAFGGLSDFERARAEDLAKLGYVAL CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEE AVDYYGDGKRAASPEEAQHLMAGLQADRTVLARRMGAALEAARALPQVDAGRIGAMGYCL EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC GGKAVLDLARTGADLRACVPLHGVYDRPNFETQTMRAAVLVLHGWDDPLAPPSALEALAA CCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHEEEEEEEECCCCCCCCHHHHHHHHH ELNEHCADWQVLGFGHTGHAFTNPNAKDSAGGMIYSATASSRAWTALTGFLAETFEGAAS HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA