| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080500
Identifier: 99080500
GI number: 99080500
Start: 706043
End: 706831
Strand: Direct
Name: 99080500
Synonym: TM1040_0659
Alternate gene names: NA
Gene position: 706043-706831 (Clockwise)
Preceding gene: 99080498
Following gene: 99080501
Centisome position: 22.06
GC content: 57.41
Gene sequence:
>789_bases ATGGCCAACACCGAAAAACCCCCGCTTCTGGCGGTCCTGATTGACGCGGACAACATATCGGCGAAATTCGCCGGGGCCAT GTTTGAGGAGATTGCTTCACTCGGAGAGGCGAGCATCCGCCGCATCTATGGTGATTTCTCGGGCGGCGGACCGCAGGGCT GGAGCAAAGACAAGCTGGCGGCGTTTGCAATCGTGCCGCACCAGCAGTTTGCCAATACTACCGGGAAGAACGCCAGCGAC ATCGCTCTGGTCATCGACGCGATGGACATTCTGCACTCAGGCCGCTTTGATGGCTTTGTGCTGATCTCCTCGGATAGCGA TTTCACCCGACTGGCGAGCCGCATTCGCGAACAAGGGTTGGACGTCTACGGTATGGGTATGCGCAAGACACCTGCAGCCT TCGTACGCGCCTGCAAGCGCTTCATCTATGTCGAGAACCTTTTGACCGAGGTCCCGAAAGACGTGCCCAAGCCGCAGAAA TCAAAGCCAAAACCCTCGACGCAATCCTCGGGCGCCACTCTCGAACAGACTGCCGCGCCGCAAGACGACGAAGCCCCGGC GGAACTTGAAGATCCGCAAAAGCTGGTCCTGCGTGCGATGGATGCGATCAGCCAAGAGGACGAGTGGTTCTCTCTTGGGC AGATCGGTCAGTACATTACGGCGGCAAGTCCCGATTTTGACACCCGCAGTTATGGCAAGCGCAAACTGTCAGATCTGATC GCAACCATGAAAATATTGGAAACGCGCCGTGGAGAAGGCAATCAGATCCTCGTACGGAGGCTCGACTGA
Upstream 100 bases:
>100_bases ACCCATCGCCACTGTGCCAGCCATGCGCGCTCAGCGCTTTTCATTTGTGCACATCCGCGTATGAAGGAGAGAGACTTCCT CACATGATACAGGACATCCA
Downstream 100 bases:
>100_bases TGTCTGTACCGCAGGCAGCGGACGCGCCTGCGCGCATCTGGCAACGAATCGAGGGTGGCCTGATCTGTGCTGCGGGGCTT TGGCTTTATGCGGGGGCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MANTEKPPLLAVLIDADNISAKFAGAMFEEIASLGEASIRRIYGDFSGGGPQGWSKDKLAAFAIVPHQQFANTTGKNASD IALVIDAMDILHSGRFDGFVLISSDSDFTRLASRIREQGLDVYGMGMRKTPAAFVRACKRFIYVENLLTEVPKDVPKPQK SKPKPSTQSSGATLEQTAAPQDDEAPAELEDPQKLVLRAMDAISQEDEWFSLGQIGQYITAASPDFDTRSYGKRKLSDLI ATMKILETRRGEGNQILVRRLD
Sequences:
>Translated_262_residues MANTEKPPLLAVLIDADNISAKFAGAMFEEIASLGEASIRRIYGDFSGGGPQGWSKDKLAAFAIVPHQQFANTTGKNASD IALVIDAMDILHSGRFDGFVLISSDSDFTRLASRIREQGLDVYGMGMRKTPAAFVRACKRFIYVENLLTEVPKDVPKPQK SKPKPSTQSSGATLEQTAAPQDDEAPAELEDPQKLVLRAMDAISQEDEWFSLGQIGQYITAASPDFDTRSYGKRKLSDLI ATMKILETRRGEGNQILVRRLD >Mature_261_residues ANTEKPPLLAVLIDADNISAKFAGAMFEEIASLGEASIRRIYGDFSGGGPQGWSKDKLAAFAIVPHQQFANTTGKNASDI ALVIDAMDILHSGRFDGFVLISSDSDFTRLASRIREQGLDVYGMGMRKTPAAFVRACKRFIYVENLLTEVPKDVPKPQKS KPKPSTQSSGATLEQTAAPQDDEAPAELEDPQKLVLRAMDAISQEDEWFSLGQIGQYITAASPDFDTRSYGKRKLSDLIA TMKILETRRGEGNQILVRRLD
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28700; Mature: 28569
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTEKPPLLAVLIDADNISAKFAGAMFEEIASLGEASIRRIYGDFSGGGPQGWSKDKLA CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE AFAIVPHQQFANTTGKNASDIALVIDAMDILHSGRFDGFVLISSDSDFTRLASRIREQGL EEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCC DVYGMGMRKTPAAFVRACKRFIYVENLLTEVPKDVPKPQKSKPKPSTQSSGATLEQTAAP CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCC QDDEAPAELEDPQKLVLRAMDAISQEDEWFSLGQIGQYITAASPDFDTRSYGKRKLSDLI CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATMKILETRRGEGNQILVRRLD HHHHHHHHHCCCCCEEEEEECC >Mature Secondary Structure ANTEKPPLLAVLIDADNISAKFAGAMFEEIASLGEASIRRIYGDFSGGGPQGWSKDKLA CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE AFAIVPHQQFANTTGKNASDIALVIDAMDILHSGRFDGFVLISSDSDFTRLASRIREQGL EEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCC DVYGMGMRKTPAAFVRACKRFIYVENLLTEVPKDVPKPQKSKPKPSTQSSGATLEQTAAP CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCC QDDEAPAELEDPQKLVLRAMDAISQEDEWFSLGQIGQYITAASPDFDTRSYGKRKLSDLI CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATMKILETRRGEGNQILVRRLD HHHHHHHHHCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA