Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080320

Identifier: 99080320

GI number: 99080320

Start: 501173

End: 501775

Strand: Reverse

Name: 99080320

Synonym: TM1040_0479

Alternate gene names: NA

Gene position: 501775-501173 (Counterclockwise)

Preceding gene: 99080322

Following gene: 99080318

Centisome position: 15.68

GC content: 64.68

Gene sequence:

>603_bases
ATGGGCATCGAGGCCGTGCAGACATTCACTGAACAAAATGAACGCCCGCGCAGCCGCTCTGTGCGAGTCGCCCTGCGCGG
GGCGCTTTGTGCACTTGTGATGGGTGGTTTCTTTGTCAGCACGGCCCCCGTCGCCACCGCGCAGGAGAGCGCGCCCGAGA
GAGCTGCCGCGCAAACTCTTGGGCCGGTCACGAACCTGCCCCTGCCCCGCTACGTGTCCATGAAAGCCGCCGAAGGCAAC
GTGCGCCGTGGCCCGTCACTCAATCATCGTATCGACTGGGTGTTCAAACGCCGCGGGATGCCATTGGAGGTCACGGCCGA
ATATGGCCACTGGCGACGCGTGCGTGACCGGGATGGACAAGGAGGCTGGGTTCATTACGCGCTTTTGTCGGGGGTGCGCA
CGGTCTTGGTCGAACAGGATCTTGTGCAAGTGCGCGCACGCCCTCAGGAGGACGCGCCGGCGGTGGCCGCGTTTGAGCTT
GGGGTTGTGGCCCAGCTTGGCGCCTGCACGCGCGACTGGTGCGAAATCACCGCCGGGGGACACAGCGGCTGGACGCACAA
AGACAATCTCTGGGGCGTTGATCCGGACGAACTGCGCGAGTAA

Upstream 100 bases:

>100_bases
GCGGGTACAAGCACCCTTCCGCCCGCGCTTGCATTGCGCTAAGAGCCGATGCAGGATCAGCGGGTGACGAGATCATAAAA
ACAAGGCGCCCGAGACAACA

Downstream 100 bases:

>100_bases
CCCGTGCAGCAAACCTAGCGCTCCGCAACCACCCGCAGGATCCTCCCGCCTGGCCCACCCGGACCACGACGACTGGCGCT
TGGTGCAAGGTATCGGCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Signal Peptide

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MGIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTLGPVTNLPLPRYVSMKAAEGN
VRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQGGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFEL
GVVAQLGACTRDWCEITAGGHSGWTHKDNLWGVDPDELRE

Sequences:

>Translated_200_residues
MGIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTLGPVTNLPLPRYVSMKAAEGN
VRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQGGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFEL
GVVAQLGACTRDWCEITAGGHSGWTHKDNLWGVDPDELRE
>Mature_199_residues
GIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTLGPVTNLPLPRYVSMKAAEGNV
RRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQGGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFELG
VVAQLGACTRDWCEITAGGHSGWTHKDNLWGVDPDELRE

Specific function: Unknown

COG id: COG3807

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22039; Mature: 21908

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTL
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHH
GPVTNLPLPRYVSMKAAEGNVRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQ
CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHCCCCCC
GGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFELGVVAQLGACTRDWCEITAGG
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHEECCC
HSGWTHKDNLWGVDPDELRE
CCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
GIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTL
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHH
GPVTNLPLPRYVSMKAAEGNVRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQ
CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHCCCCCC
GGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFELGVVAQLGACTRDWCEITAGG
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHEECCC
HSGWTHKDNLWGVDPDELRE
CCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA