| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789361
Identifier: 91789361
GI number: 91789361
Start: 3706582
End: 3707952
Strand: Direct
Name: 91789361
Synonym: Bpro_3507
Alternate gene names: NA
Gene position: 3706582-3707952 (Clockwise)
Preceding gene: 91789360
Following gene: 91789362
Centisome position: 71.28
GC content: 62.58
Gene sequence:
>1371_bases ATGCCGAAAACCATACGCTACACCCTGCTGTCGCTGCGCGATCTGGCGGTCTCTGCCGGTCCCTTCATTTTGCTGGCCGC CACGCTGCTGGTGCTGGCCTACTGGTGGCTGGACCCCAACCCGCCCAAGCGGGTGGTACTGGCCACCGGCCCGGCACAAA GCGCCTATGAAGAATTTGGCAAGCGCTACGCGCGCATTCTTGCGAAAGACGGCATCGAGGTCGTGCAGCTGCCTTCGGAA GGGTCGGCAACCAATTTGCAGCTGCTGCGCGAGGGCAAGGCCGATCTCGGTTTTGTGCAGGGCGGCACCAGCGAGGCAGG CATCGAAAATGACGGGCAGCTGGAATCGCTGGGCAGCCTGTTTCTGGAACCGGTGTGGCTGTTTTACCGGGAGGCGGCTG CGCGCAAAGTCGCATCCGCAGCGCCGCGCGGCAATGCCTCGGCAGACGGTGCCGCCGCCGGCTCTACCCTCAGCGCCCTG ACACAACTGCAAGGCTTGCGCGTCAACGTCGGCACACCCGGCAGCGGTGTGCCCAACCTGGTGAACAAATTGCTGGAGAG CAACCGCATTGACAGCAGCACCCTGAAAATCTCCCGGCTGGAGCAGACCCCGGCCACCGTGGCCTTTCTGGGCGGCGAGC TGGACGCCATTGTGTTCGCCTCGGCACCCGAATCGCTGATGGTGCAGATGCTGCTGCAGACACCCGGCGTCAAGCTGATG GATTTTGCGCAAAGCGAAGCCTACTCGCGGCGCTTTGAGTTCCTGAGCCCCGCGGTGCTGCCGCGCGGCGTGGTGGATCT GGCCACCAATATTCCGCCGCAGGATGTCCGCCTGGTGGCGCCCACCACCACCCTGCTCACGCGGGCCGGCACACACCCGG CGCTGCTGCAGCTGTTTGCACTGGCCGGTAACGAGATCCACGGCAGTGCCGGCTGGTTCAAGCGGGCGCGCGAATACCCG AATGTGAAGAACAACGAATTGCCGGTTGCCAAAGAAGCCGAGCGCAGCATTCAGGCCGGTGCGCCGCTGCTGCAGCGCTA CCTGCCCTTCTGGGTGGCCAACCTGGTCGAGCGCATGTGGCTGGTCATGGGCATCATCATCGCGGTGCTGTTGCCGCTGT CGCGCATTGTGCCGCCACTCTACGAGTTTCGAGTACGCTCGCGCATTTTCAGGTGGTATGGCCAGTTGCGTGATATTGAA AGCCGCATTGAGAGCACGGGCGAAAACACGCGCAATAGCGCGCTGCTCGAAGAACTCAACAGCCTGGAAAATCGCGCTGA AAAAATCAGCGTGCCGCTGTCATACACCGACGAGCTGTATGCGCTGCGCAGCAATATTCATCTGGTGAGGAAGAAGTTGC AGAGGTTGTAG
Upstream 100 bases:
>100_bases CATAGCTAATAGCCTATATTTTTTCTGGTCTTCAGGTGTTTTTACCAATAGAAAATCTCTGGGGGTACGCCGCGGCACGC CACATGCTATGGTTCACAGC
Downstream 100 bases:
>100_bases CCGGCATATTCGACCGCCTGCTTTCGCCAGATTCCGGCTCGCCGCGTTCCGGTGCTGCCGGCGATTGAAGTCTGCAACAT CACCGGCGGGAAAGGTTTGA
Product: TRAP transporter solute receptor TAXI family protein
Products: NA
Alternate protein names: TRAP Transporter Solute Receptor TAXI Family; TRAP-Type Transport System Periplasmic Component Protein; TRAP-Type Transport System Periplasmic Protein; Trap Transporter Solute Receptor Taxi Family Protein; TAXI Family TRAP Transporter Solute Receptor; Signal Peptide; TRAP-Type Transport System Periplasmic Component-Like; Trap Transporter Solute Receptor Taxi Family
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MPKTIRYTLLSLRDLAVSAGPFILLAATLLVLAYWWLDPNPPKRVVLATGPAQSAYEEFGKRYARILAKDGIEVVQLPSE GSATNLQLLREGKADLGFVQGGTSEAGIENDGQLESLGSLFLEPVWLFYREAAARKVASAAPRGNASADGAAAGSTLSAL TQLQGLRVNVGTPGSGVPNLVNKLLESNRIDSSTLKISRLEQTPATVAFLGGELDAIVFASAPESLMVQMLLQTPGVKLM DFAQSEAYSRRFEFLSPAVLPRGVVDLATNIPPQDVRLVAPTTTLLTRAGTHPALLQLFALAGNEIHGSAGWFKRAREYP NVKNNELPVAKEAERSIQAGAPLLQRYLPFWVANLVERMWLVMGIIIAVLLPLSRIVPPLYEFRVRSRIFRWYGQLRDIE SRIESTGENTRNSALLEELNSLENRAEKISVPLSYTDELYALRSNIHLVRKKLQRL
Sequences:
>Translated_456_residues MPKTIRYTLLSLRDLAVSAGPFILLAATLLVLAYWWLDPNPPKRVVLATGPAQSAYEEFGKRYARILAKDGIEVVQLPSE GSATNLQLLREGKADLGFVQGGTSEAGIENDGQLESLGSLFLEPVWLFYREAAARKVASAAPRGNASADGAAAGSTLSAL TQLQGLRVNVGTPGSGVPNLVNKLLESNRIDSSTLKISRLEQTPATVAFLGGELDAIVFASAPESLMVQMLLQTPGVKLM DFAQSEAYSRRFEFLSPAVLPRGVVDLATNIPPQDVRLVAPTTTLLTRAGTHPALLQLFALAGNEIHGSAGWFKRAREYP NVKNNELPVAKEAERSIQAGAPLLQRYLPFWVANLVERMWLVMGIIIAVLLPLSRIVPPLYEFRVRSRIFRWYGQLRDIE SRIESTGENTRNSALLEELNSLENRAEKISVPLSYTDELYALRSNIHLVRKKLQRL >Mature_455_residues PKTIRYTLLSLRDLAVSAGPFILLAATLLVLAYWWLDPNPPKRVVLATGPAQSAYEEFGKRYARILAKDGIEVVQLPSEG SATNLQLLREGKADLGFVQGGTSEAGIENDGQLESLGSLFLEPVWLFYREAAARKVASAAPRGNASADGAAAGSTLSALT QLQGLRVNVGTPGSGVPNLVNKLLESNRIDSSTLKISRLEQTPATVAFLGGELDAIVFASAPESLMVQMLLQTPGVKLMD FAQSEAYSRRFEFLSPAVLPRGVVDLATNIPPQDVRLVAPTTTLLTRAGTHPALLQLFALAGNEIHGSAGWFKRAREYPN VKNNELPVAKEAERSIQAGAPLLQRYLPFWVANLVERMWLVMGIIIAVLLPLSRIVPPLYEFRVRSRIFRWYGQLRDIES RIESTGENTRNSALLEELNSLENRAEKISVPLSYTDELYALRSNIHLVRKKLQRL
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50034; Mature: 49903
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKTIRYTLLSLRDLAVSAGPFILLAATLLVLAYWWLDPNPPKRVVLATGPAQSAYEEFG CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH KRYARILAKDGIEVVQLPSEGSATNLQLLREGKADLGFVQGGTSEAGIENDGQLESLGSL HHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHH FLEPVWLFYREAAARKVASAAPRGNASADGAAAGSTLSALTQLQGLRVNVGTPGSGVPNL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCHHHH VNKLLESNRIDSSTLKISRLEQTPATVAFLGGELDAIVFASAPESLMVQMLLQTPGVKLM HHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHCCCCHHH DFAQSEAYSRRFEFLSPAVLPRGVVDLATNIPPQDVRLVAPTTTLLTRAGTHPALLQLFA HHHHHHHHHHHHHHHCCHHCCCHHHHHHCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHH LAGNEIHGSAGWFKRAREYPNVKNNELPVAKEAERSIQAGAPLLQRYLPFWVANLVERMW HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LVMGIIIAVLLPLSRIVPPLYEFRVRSRIFRWYGQLRDIESRIESTGENTRNSALLEELN HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH SLENRAEKISVPLSYTDELYALRSNIHLVRKKLQRL HHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PKTIRYTLLSLRDLAVSAGPFILLAATLLVLAYWWLDPNPPKRVVLATGPAQSAYEEFG CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH KRYARILAKDGIEVVQLPSEGSATNLQLLREGKADLGFVQGGTSEAGIENDGQLESLGSL HHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHH FLEPVWLFYREAAARKVASAAPRGNASADGAAAGSTLSALTQLQGLRVNVGTPGSGVPNL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCHHHH VNKLLESNRIDSSTLKISRLEQTPATVAFLGGELDAIVFASAPESLMVQMLLQTPGVKLM HHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHCCCCHHH DFAQSEAYSRRFEFLSPAVLPRGVVDLATNIPPQDVRLVAPTTTLLTRAGTHPALLQLFA HHHHHHHHHHHHHHHCCHHCCCHHHHHHCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHH LAGNEIHGSAGWFKRAREYPNVKNNELPVAKEAERSIQAGAPLLQRYLPFWVANLVERMW HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LVMGIIIAVLLPLSRIVPPLYEFRVRSRIFRWYGQLRDIESRIESTGENTRNSALLEELN HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH SLENRAEKISVPLSYTDELYALRSNIHLVRKKLQRL HHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA