| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ispG [H]
Identifier: 91788470
GI number: 91788470
Start: 2738568
End: 2739842
Strand: Reverse
Name: ispG [H]
Synonym: Bpro_2608
Alternate gene names: 91788470
Gene position: 2739842-2738568 (Counterclockwise)
Preceding gene: 91788471
Following gene: 91788469
Centisome position: 52.69
GC content: 62.75
Gene sequence:
>1275_bases GTGGAGCCTTGCCTTCCCATCGAGTCGGCTTTTCCGAAAGCACGGCGTTCTACCCAGGCGCTGGTTGCCTGGGGCTCCCG CGTGGTTACCGTGGGCGGCGACGCGCCGGTGCGTATCCAGTCCATGACCAACACGGACACCGTGGATGCCATTGGTACAG CCATTCAGGTCAAGGAGCTTGCGCTGGCTGGCTCCGAAATGGTTCGCATCACCGTGAACACGCCTGAGGCGGCGCAGGCC GTGCCTCACGTTCGGGAGCAGCTGGATCGCATGGGCATCGACGTGCCGCTGATTGGTGACTTTCATTACAACGGTCACCG CCTGCTGACGGATTACCCGGCCTGTGCCGAGGCCTTGTCCAAATACCGCATCAACCCGGGTAACGTGGGCAAGGGCGACA AGCGCGACCGGCAATTCGGCCAGATGATTGAAGTCGCCATGCGCTGGAACAAGCCCGTGCGCATCGGGGTGAACTGGGGC AGCCTTGACCAGGAACTGCTGGCCAGCTTGATGGACGACAACAGTGCGCGTGCCACCCCGTGGGATGCCAGGCAGGTCAT GTATGAGGCGCTGATCACCTCGGCCATTGATTCCGCCCGCCGTGCCGAGGAAATGGGCATGCGGCGTAACCAGATCATCC TGTCCTGCAAGGTGAGCGGTGTCCAGGATCTCATTTCCGTGTACCGCGAATTGGCCAAACGCAGCGACTACGCCCTTCAC CTCGGCCTCACCGAGGCCGGCATGGGCACCAAAGGCACGGTCGCCTCCGCCACCGCGCTGTCGATTTTGCTGCAGGAAGG CATTGGCGACACGATTCGCGTCTCCCTGACCCCCCAGCCCGGCGAGGCCCGCACCCAGGAAGTGGTGATTGCTTCGGAGA TCATCCAGGCCCTGGGGCTGCGCAACTTCGTCCCCAGCGTCACCGCCTGTCCCGGCTGTGGCCGCACCACCAGCACCACC TTTCAGGAGCTTGCCAAGCAGATTGACGACTTCCTGCGGGCCCAGATGCCGGTCTGGCGCGCGCAGTACCCGGGCGTTGA AGCGCTCAAGGTCGCGGTGATGGGCTGTATCGTCAATGGCCCCGGTGAAAGCAAGCATGCCGATATCGGCATCAGTCTGC CTGGATCGGGCGAGGCGCCGGCCGCACCGGTATTTATTGATGGCGAGAAGAAGCTGACCCTGCGCGGAGACAACATTGCG CAGGAGTTCCAGGTCATCGTTGAAAACTACATTGAAAAACGCTTTGGCACGCAGTCCGTCGCCGAAGCCGCGTGA
Upstream 100 bases:
>100_bases TGGTTGGCCGGGCCGACGCCACCCAGGTGCAGGTGCGCGGCCGGGCATTCGACCTGACCGCCGTTGCCCGGGATAACGTG GCCCGTTTCGAGGTGAAATA
Downstream 100 bases:
>100_bases ATCCCATGCCTGAAAAAATGAATGCCGGCCAGACGGAGAAATTACCCTTGGCCAAAATCGAAAAACTCACCGCCGTCAAG GGCATGAACGACATCTTGCC
Product: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Products: NA
Alternate protein names: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [H]
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MEPCLPIESAFPKARRSTQALVAWGSRVVTVGGDAPVRIQSMTNTDTVDAIGTAIQVKELALAGSEMVRITVNTPEAAQA VPHVREQLDRMGIDVPLIGDFHYNGHRLLTDYPACAEALSKYRINPGNVGKGDKRDRQFGQMIEVAMRWNKPVRIGVNWG SLDQELLASLMDDNSARATPWDARQVMYEALITSAIDSARRAEEMGMRRNQIILSCKVSGVQDLISVYRELAKRSDYALH LGLTEAGMGTKGTVASATALSILLQEGIGDTIRVSLTPQPGEARTQEVVIASEIIQALGLRNFVPSVTACPGCGRTTSTT FQELAKQIDDFLRAQMPVWRAQYPGVEALKVAVMGCIVNGPGESKHADIGISLPGSGEAPAAPVFIDGEKKLTLRGDNIA QEFQVIVENYIEKRFGTQSVAEAA
Sequences:
>Translated_424_residues MEPCLPIESAFPKARRSTQALVAWGSRVVTVGGDAPVRIQSMTNTDTVDAIGTAIQVKELALAGSEMVRITVNTPEAAQA VPHVREQLDRMGIDVPLIGDFHYNGHRLLTDYPACAEALSKYRINPGNVGKGDKRDRQFGQMIEVAMRWNKPVRIGVNWG SLDQELLASLMDDNSARATPWDARQVMYEALITSAIDSARRAEEMGMRRNQIILSCKVSGVQDLISVYRELAKRSDYALH LGLTEAGMGTKGTVASATALSILLQEGIGDTIRVSLTPQPGEARTQEVVIASEIIQALGLRNFVPSVTACPGCGRTTSTT FQELAKQIDDFLRAQMPVWRAQYPGVEALKVAVMGCIVNGPGESKHADIGISLPGSGEAPAAPVFIDGEKKLTLRGDNIA QEFQVIVENYIEKRFGTQSVAEAA >Mature_424_residues MEPCLPIESAFPKARRSTQALVAWGSRVVTVGGDAPVRIQSMTNTDTVDAIGTAIQVKELALAGSEMVRITVNTPEAAQA VPHVREQLDRMGIDVPLIGDFHYNGHRLLTDYPACAEALSKYRINPGNVGKGDKRDRQFGQMIEVAMRWNKPVRIGVNWG SLDQELLASLMDDNSARATPWDARQVMYEALITSAIDSARRAEEMGMRRNQIILSCKVSGVQDLISVYRELAKRSDYALH LGLTEAGMGTKGTVASATALSILLQEGIGDTIRVSLTPQPGEARTQEVVIASEIIQALGLRNFVPSVTACPGCGRTTSTT FQELAKQIDDFLRAQMPVWRAQYPGVEALKVAVMGCIVNGPGESKHADIGISLPGSGEAPAAPVFIDGEKKLTLRGDNIA QEFQVIVENYIEKRFGTQSVAEAA
Specific function: Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate [H]
COG id: COG0821
COG function: function code I; Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ispG family [H]
Homologues:
Organism=Escherichia coli, GI1788863, Length=393, Percent_Identity=31.8066157760814, Blast_Score=179, Evalue=4e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016425 - InterPro: IPR004588 [H]
Pfam domain/function: PF04551 GcpE [H]
EC number: =1.17.7.1 [H]
Molecular weight: Translated: 45873; Mature: 45873
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPCLPIESAFPKARRSTQALVAWGSRVVTVGGDAPVRIQSMTNTDTVDAIGTAIQVKEL CCCCCCCHHCCCHHHHHHHHHEECCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH ALAGSEMVRITVNTPEAAQAVPHVREQLDRMGIDVPLIGDFHYNGHRLLTDYPACAEALS HHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECEEECCCEEEECCHHHHHHHH KYRINPGNVGKGDKRDRQFGQMIEVAMRWNKPVRIGVNWGSLDQELLASLMDDNSARATP HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCC WDARQVMYEALITSAIDSARRAEEMGMRRNQIILSCKVSGVQDLISVYRELAKRSDYALH CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEE LGLTEAGMGTKGTVASATALSILLQEGIGDTIRVSLTPQPGEARTQEVVIASEIIQALGL EECHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH RNFVPSVTACPGCGRTTSTTFQELAKQIDDFLRAQMPVWRAQYPGVEALKVAVMGCIVNG HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHEECC PGESKHADIGISLPGSGEAPAAPVFIDGEKKLTLRGDNIAQEFQVIVENYIEKRFGTQSV CCCCCCCEEEEECCCCCCCCCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHH AEAA HHCC >Mature Secondary Structure MEPCLPIESAFPKARRSTQALVAWGSRVVTVGGDAPVRIQSMTNTDTVDAIGTAIQVKEL CCCCCCCHHCCCHHHHHHHHHEECCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH ALAGSEMVRITVNTPEAAQAVPHVREQLDRMGIDVPLIGDFHYNGHRLLTDYPACAEALS HHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECEEECCCEEEECCHHHHHHHH KYRINPGNVGKGDKRDRQFGQMIEVAMRWNKPVRIGVNWGSLDQELLASLMDDNSARATP HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCC WDARQVMYEALITSAIDSARRAEEMGMRRNQIILSCKVSGVQDLISVYRELAKRSDYALH CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEE LGLTEAGMGTKGTVASATALSILLQEGIGDTIRVSLTPQPGEARTQEVVIASEIIQALGL EECHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH RNFVPSVTACPGCGRTTSTTFQELAKQIDDFLRAQMPVWRAQYPGVEALKVAVMGCIVNG HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHEECC PGESKHADIGISLPGSGEAPAAPVFIDGEKKLTLRGDNIAQEFQVIVENYIEKRFGTQSV CCCCCCCEEEEECCCCCCCCCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHH AEAA HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]