| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is hisS [H]
Identifier: 91788469
GI number: 91788469
Start: 2737204
End: 2738562
Strand: Reverse
Name: hisS [H]
Synonym: Bpro_2607
Alternate gene names: 91788469
Gene position: 2738562-2737204 (Counterclockwise)
Preceding gene: 91788470
Following gene: 91788468
Centisome position: 52.66
GC content: 61.88
Gene sequence:
>1359_bases ATGCCTGAAAAAATGAATGCCGGCCAGACGGAGAAATTACCCTTGGCCAAAATCGAAAAACTCACCGCCGTCAAGGGCAT GAACGACATCTTGCCGCCGGATTCGGCGCGCTGGGAGTGGCTCGAAGACAAAGTCCGCACGCTGATGGGGCGCTATGCCT ACCGTAATATCCGCACCCCCATTCTTGAGCACACGCAGCTGTTTGTGCGGGGGATTGGCGAGGTCACGGACATCGTCGAA AAGGAAATGTATTCCTTCGAAGACCGTGCGGACAAGTATGGTGATCATGACCACCTCACCATGCGGCCTGAAAATACCGC CAGCGTGGTTCGTGCGGTCACCGAACACAACCTGCTCTATGAGGGCGGCAAGCGCCTCTACTATATGGGCCCGATGTTCC GTCGGGAGCGCCCGCAACGTGGCCGTTACCGCCAGTTTCATCAGATTGGCGCCGAAGCACTGGGTTTTGCCGGACCGGAA GTGGATGCCGAGCTGATTTTGCTGGCCGCGGCGCTCTGGAAGGAGCTGGGCCTGAGCGATTGGCGCCTGGAAATCAATAG CCTGGGTCAGCCCGATGAGCGTGCCCAGCACCGTGCCCAACTGATCGCCCACCTGGAACAACATGCCGACGTCCTGGACG AGGAAGCACGCCGGCGCCTGCACAGCAATCCGCTGCGCATTCTTGACACCAAGAATCCGGTCATGCAAGCAGTGGTAGAC AGCGCCCCCCGGCTGATCGACTTTCTGGGGCCCCAGTCGTTGGCGCATTTTGAGGGACTTAAAGCCATCCTCGATGCCAA CGGCATCCCCTGGACCCTGAATCCCCGACTGGTGCGCGGGCTGGATTATTACAACCTCACGGTGTTTGAGTTTGTGACCG ACCGGCTGGGCGCCCAAGGCACCATTTGCGCCGGAGGGCGCTATGACTACCTGATTGAGCAGATGGGCGGCAAAGCCGCG CCGGCAGTGGGATGGGCCTTGGGCGTAGAGCGTGTGCTGGAGCTCATCAAGGAGCAGGGCGCTGCCGTCACGCCGCCGGT ACCCGATGCCTATGCGGTGATTCCCGAGGCATCTGCCTTGCCCGTCGTTCTGCAAACCCTGCAGGCCTTGCGCGCGGCGG GGGTGAGTGTGCAGATGCACGCCGGTGCCAGCGCCGACGGCATGGGCAGCATGAAGTCCCAGTTCAAGAAGGCCGATGGC AGCGGCGCGCGGTTTGCCCTCATTTTCGGTCCGGCCGAGCTGGCGCAGGGGCACGTTGCCGTCAAACCGCTGCGGGGGGA AAAGGCTGATGTGGCGCAGGTGCAAACCTTGCAGCCACTGGACGACGTGTCCGCCTGGGCTCACGCCTTGCGCGCCTAG
Upstream 100 bases:
>100_bases TGCGCGGAGACAACATTGCGCAGGAGTTCCAGGTCATCGTTGAAAACTACATTGAAAAACGCTTTGGCACGCAGTCCGTC GCCGAAGCCGCGTGAATCCC
Downstream 100 bases:
>100_bases CCTTGCATTTCGCCCCCCTACAATCACCCCACCTCAATCCGCGCCGTTATCGGGCAGAACAAGCAGACTTTTATGGCAAA ACATCTCGATTTGGAAGAGC
Product: histidyl-tRNA synthetase
Products: NA
Alternate protein names: Histidine--tRNA ligase; HisRS [H]
Number of amino acids: Translated: 452; Mature: 451
Protein sequence:
>452_residues MPEKMNAGQTEKLPLAKIEKLTAVKGMNDILPPDSARWEWLEDKVRTLMGRYAYRNIRTPILEHTQLFVRGIGEVTDIVE KEMYSFEDRADKYGDHDHLTMRPENTASVVRAVTEHNLLYEGGKRLYYMGPMFRRERPQRGRYRQFHQIGAEALGFAGPE VDAELILLAAALWKELGLSDWRLEINSLGQPDERAQHRAQLIAHLEQHADVLDEEARRRLHSNPLRILDTKNPVMQAVVD SAPRLIDFLGPQSLAHFEGLKAILDANGIPWTLNPRLVRGLDYYNLTVFEFVTDRLGAQGTICAGGRYDYLIEQMGGKAA PAVGWALGVERVLELIKEQGAAVTPPVPDAYAVIPEASALPVVLQTLQALRAAGVSVQMHAGASADGMGSMKSQFKKADG SGARFALIFGPAELAQGHVAVKPLRGEKADVAQVQTLQPLDDVSAWAHALRA
Sequences:
>Translated_452_residues MPEKMNAGQTEKLPLAKIEKLTAVKGMNDILPPDSARWEWLEDKVRTLMGRYAYRNIRTPILEHTQLFVRGIGEVTDIVE KEMYSFEDRADKYGDHDHLTMRPENTASVVRAVTEHNLLYEGGKRLYYMGPMFRRERPQRGRYRQFHQIGAEALGFAGPE VDAELILLAAALWKELGLSDWRLEINSLGQPDERAQHRAQLIAHLEQHADVLDEEARRRLHSNPLRILDTKNPVMQAVVD SAPRLIDFLGPQSLAHFEGLKAILDANGIPWTLNPRLVRGLDYYNLTVFEFVTDRLGAQGTICAGGRYDYLIEQMGGKAA PAVGWALGVERVLELIKEQGAAVTPPVPDAYAVIPEASALPVVLQTLQALRAAGVSVQMHAGASADGMGSMKSQFKKADG SGARFALIFGPAELAQGHVAVKPLRGEKADVAQVQTLQPLDDVSAWAHALRA >Mature_451_residues PEKMNAGQTEKLPLAKIEKLTAVKGMNDILPPDSARWEWLEDKVRTLMGRYAYRNIRTPILEHTQLFVRGIGEVTDIVEK EMYSFEDRADKYGDHDHLTMRPENTASVVRAVTEHNLLYEGGKRLYYMGPMFRRERPQRGRYRQFHQIGAEALGFAGPEV DAELILLAAALWKELGLSDWRLEINSLGQPDERAQHRAQLIAHLEQHADVLDEEARRRLHSNPLRILDTKNPVMQAVVDS APRLIDFLGPQSLAHFEGLKAILDANGIPWTLNPRLVRGLDYYNLTVFEFVTDRLGAQGTICAGGRYDYLIEQMGGKAAP AVGWALGVERVLELIKEQGAAVTPPVPDAYAVIPEASALPVVLQTLQALRAAGVSVQMHAGASADGMGSMKSQFKKADGS GARFALIFGPAELAQGHVAVKPLRGEKADVAQVQTLQPLDDVSAWAHALRA
Specific function: Unknown
COG id: COG0124
COG function: function code J; Histidyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1788861, Length=422, Percent_Identity=50.7109004739336, Blast_Score=422, Evalue=1e-119, Organism=Saccharomyces cerevisiae, GI6325290, Length=478, Percent_Identity=24.2677824267782, Blast_Score=93, Evalue=7e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR015807 - InterPro: IPR004516 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF00587 tRNA-synt_2b [H]
EC number: =6.1.1.21 [H]
Molecular weight: Translated: 50056; Mature: 49925
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEKMNAGQTEKLPLAKIEKLTAVKGMNDILPPDSARWEWLEDKVRTLMGRYAYRNIRTP CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH ILEHTQLFVRGIGEVTDIVEKEMYSFEDRADKYGDHDHLTMRPENTASVVRAVTEHNLLY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHE EGGKRLYYMGPMFRRERPQRGRYRQFHQIGAEALGFAGPEVDAELILLAAALWKELGLSD ECCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC WRLEINSLGQPDERAQHRAQLIAHLEQHADVLDEEARRRLHSNPLRILDTKNPVMQAVVD EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH SAPRLIDFLGPQSLAHFEGLKAILDANGIPWTLNPRLVRGLDYYNLTVFEFVTDRLGAQG CCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEECCHHHHHCCCHHHHHHHHHHHHHHCCCC TICAGGRYDYLIEQMGGKAAPAVGWALGVERVLELIKEQGAAVTPPVPDAYAVIPEASAL EEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHH PVVLQTLQALRAAGVSVQMHAGASADGMGSMKSQFKKADGSGARFALIFGPAELAQGHVA HHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHCCCEE VKPLRGEKADVAQVQTLQPLDDVSAWAHALRA EECCCCCCCHHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure PEKMNAGQTEKLPLAKIEKLTAVKGMNDILPPDSARWEWLEDKVRTLMGRYAYRNIRTP CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH ILEHTQLFVRGIGEVTDIVEKEMYSFEDRADKYGDHDHLTMRPENTASVVRAVTEHNLLY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHE EGGKRLYYMGPMFRRERPQRGRYRQFHQIGAEALGFAGPEVDAELILLAAALWKELGLSD ECCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC WRLEINSLGQPDERAQHRAQLIAHLEQHADVLDEEARRRLHSNPLRILDTKNPVMQAVVD EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH SAPRLIDFLGPQSLAHFEGLKAILDANGIPWTLNPRLVRGLDYYNLTVFEFVTDRLGAQG CCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEECCHHHHHCCCHHHHHHHHHHHHHHCCCC TICAGGRYDYLIEQMGGKAAPAVGWALGVERVLELIKEQGAAVTPPVPDAYAVIPEASAL EEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHH PVVLQTLQALRAAGVSVQMHAGASADGMGSMKSQFKKADGSGARFALIFGPAELAQGHVA HHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHCCCEE VKPLRGEKADVAQVQTLQPLDDVSAWAHALRA EECCCCCCCHHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA