| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yfgM [C]
Identifier: 91788468
GI number: 91788468
Start: 2736436
End: 2737131
Strand: Reverse
Name: yfgM [C]
Synonym: Bpro_2606
Alternate gene names: 91788468
Gene position: 2737131-2736436 (Counterclockwise)
Preceding gene: 91788469
Following gene: 91788467
Centisome position: 52.63
GC content: 58.62
Gene sequence:
>696_bases ATGGCAAAACATCTCGATTTGGAAGAGCAGGAACAACTTGATGAACTCAAGCATTTCTGGAAGCAGTATGGCGACCTGAT CACCTGGGGCCTGATCGCCGTGTTTGGCATTTTTGCGGCCTGGAACGGTTATCAGTACTGGCAGCGCAGCCAGGCGGCGC AGGCTTCCGTGATGTACGACGAAATCGAGCGCGCTGTTCAGTCGGGTGATCAGGCCAGGATTGACCGTTCGTTGGCGGAC ATGAAAGACCGTTTTGGCCGCACCACCTATGCCCAGCAAGCCGGTCTGCTCGCCGCCAGGGCCTATTACGACAAGGGCAA CCTGGACGCTTCCCGCGCCGCCTTGACCGGGGTGGCCGAGAAGGCTTCTGACGAGGGTTATCAGGCCATTGCCCGGTTGC GACTAGCCGGTCTTTTGCTGGAAAAGAAAGCCTACGACGAAGCCCTGCAGCAGCTGTCCGCTTCTTTCCCGAAAGATTTT GCGGCTCTGGCAGCCGACCGCCGCGGCGATATCCTGGCCGCCCAGGGCAAGAAAACCGAAGCCCGGGTGGAATATGAAAA AGCCTACAAGGGGCTCGACGAGCGTGCCGAGTACCGGCGCCTGGTGGAGGTCAAACTCAATGCGCTTGGCGTTGATCCCA CCGCAGGTTCCACCAAACTGACAACGACCGCAGCCAATACCGAGGTGAAGAAATGA
Upstream 100 bases:
>100_bases CGCCTGGGCTCACGCCTTGCGCGCCTAGCCTTGCATTTCGCCCCCCTACAATCACCCCACCTCAATCCGCGCCGTTATCG GGCAGAACAAGCAGACTTTT
Downstream 100 bases:
>100_bases TGATGCAGTCTTTTAGGCCCCTGGCCCAGATTTCTCGGCTGCCCTTGGCCATTTGTTTTGTAGCTCTGCTGGCTGGCTGC TTTGGCGGCGCCACCAAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: ORF2 [H]
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MAKHLDLEEQEQLDELKHFWKQYGDLITWGLIAVFGIFAAWNGYQYWQRSQAAQASVMYDEIERAVQSGDQARIDRSLAD MKDRFGRTTYAQQAGLLAARAYYDKGNLDASRAALTGVAEKASDEGYQAIARLRLAGLLLEKKAYDEALQQLSASFPKDF AALAADRRGDILAAQGKKTEARVEYEKAYKGLDERAEYRRLVEVKLNALGVDPTAGSTKLTTTAANTEVKK
Sequences:
>Translated_231_residues MAKHLDLEEQEQLDELKHFWKQYGDLITWGLIAVFGIFAAWNGYQYWQRSQAAQASVMYDEIERAVQSGDQARIDRSLAD MKDRFGRTTYAQQAGLLAARAYYDKGNLDASRAALTGVAEKASDEGYQAIARLRLAGLLLEKKAYDEALQQLSASFPKDF AALAADRRGDILAAQGKKTEARVEYEKAYKGLDERAEYRRLVEVKLNALGVDPTAGSTKLTTTAANTEVKK >Mature_230_residues AKHLDLEEQEQLDELKHFWKQYGDLITWGLIAVFGIFAAWNGYQYWQRSQAAQASVMYDEIERAVQSGDQARIDRSLADM KDRFGRTTYAQQAGLLAARAYYDKGNLDASRAALTGVAEKASDEGYQAIARLRLAGLLLEKKAYDEALQQLSASFPKDFA ALAADRRGDILAAQGKKTEARVEYEKAYKGLDERAEYRRLVEVKLNALGVDPTAGSTKLTTTAANTEVKK
Specific function: Unknown
COG id: COG2976
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TPR repeat [H]
Homologues:
Organism=Escherichia coli, GI1788860, Length=206, Percent_Identity=28.6407766990291, Blast_Score=72, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018704 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF09976 DUF2133 [H]
EC number: NA
Molecular weight: Translated: 25768; Mature: 25637
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKHLDLEEQEQLDELKHFWKQYGDLITWGLIAVFGIFAAWNGYQYWQRSQAAQASVMYD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH EIERAVQSGDQARIDRSLADMKDRFGRTTYAQQAGLLAARAYYDKGNLDASRAALTGVAE HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH KASDEGYQAIARLRLAGLLLEKKAYDEALQQLSASFPKDFAALAADRRGDILAAQGKKTE HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCCCCH ARVEYEKAYKGLDERAEYRRLVEVKLNALGVDPTAGSTKLTTTAANTEVKK HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC >Mature Secondary Structure AKHLDLEEQEQLDELKHFWKQYGDLITWGLIAVFGIFAAWNGYQYWQRSQAAQASVMYD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH EIERAVQSGDQARIDRSLADMKDRFGRTTYAQQAGLLAARAYYDKGNLDASRAALTGVAE HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH KASDEGYQAIARLRLAGLLLEKKAYDEALQQLSASFPKDFAALAADRRGDILAAQGKKTE HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCCCCH ARVEYEKAYKGLDERAEYRRLVEVKLNALGVDPTAGSTKLTTTAANTEVKK HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10655208 [H]