| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787964
Identifier: 91787964
GI number: 91787964
Start: 2177514
End: 2179091
Strand: Direct
Name: 91787964
Synonym: Bpro_2091
Alternate gene names: NA
Gene position: 2177514-2179091 (Clockwise)
Preceding gene: 91787963
Following gene: 91787965
Centisome position: 41.87
GC content: 62.86
Gene sequence:
>1578_bases ATGAGCGCCGCCGACTGGCTCACTCGAAGTGTTTCCAAGTTGCGGGTTGTGCCCGACGCCGGAGCGAAAATGTCATCCGA AAAATCACCAAACTCCGCTGCCGAGTCCACGGCGCCAGCAACACCAAAAGCATCGACAACACCAACAGCGCCAACGGCGC CGAAGGCCTCTCCGGCGCCTGCTGCGCGGGCCGGTGTGCCGGCAGCGGGCGATGCCCGAACCCCGCCCCCGGTTGCCGGC CGTTCGACCCGAGAGCGGCTTAATGCCACGCTGCGGCACAAGGAGGAGGCACTCTCGCCGCGCGTCTTGCGCCGGACGCT GGAGGAGCTGAAGGCGATCGTGGATCCGCAGGTCAGCGAGGTTGAAGGCGGGCGCCGAGCCAAGGGTGTTGCCGGCTGGT ATGCCGGCGCCGCCTTGAATGAGCGGCGCGACATGTGGCTCCTGATGAGCGAGCAGTTTGTTGCCGACGCCCAGAAGGTC AAGCTCGCACAAGCCCAGTTTGCCGCCGCCGTCGGAACGCCTGACGAGGCCGTTGCCGAGGTGCGCTATCGCCGTGCCAC GGTGTCACCGCGCAGACGCCTGCTCCAGCGCTTCAGCGCGTTCCCGGAAGGCATCCGCTTTCTGGTGGATTTGCGAGCCG ACATGCTGCCCTACCTGAAGGCCGACAAGCGCCTGCAGGCGCTGGATGTCGAGATGGAGTACATGTTCTCCACCTGGTTC GACGTCGGCTTCCTTGACCTGCGCCGCATCAGCTGGGATTCCCCGGCATCCCTGATTGAAAAACTGATCAAGTACGAGGC GGTGCACGACATCAAGAGCTGGGCCGATGTGAAGAACCGGCTTGACTCTGACCGCCGCTGCTATGGCTTCTTCCATCCGC GCCTGCCCGACGAGCCGCTGATATTTGTGGAAGTCGCGTTGATCGATGCCATGTCCCACAGCATCACGCCGCTGCTGGAC GAGTCGGCCGACGCGGTGGACGTGAACAAGGCGACCACGGCGATTTTTTATTCCATCAGCAACACACAGGCTGGTTTGCG CGGCGTGAGCTTTGGCGACTCCCTGATCAAGCGGGTTGTGGAGACCCTGAAGGAAGAGTTTCCGCGGCTCAGGACGTTTG CCACGCTCTCGCCGATTCCGGGCTTCAGGAGCTGGCTTGCCAAGAACGCTGGCGCCATGCTGGAGAGCCTGGGCGAGAAG GATAGGGTGGCGCTGGGCCGTGCCGTGGGGTTTGAGCCGCCGGGGGTTGGGCATTTTCTCAGCGCTGCAGAGGGTGCCCT GACCTTGCATGAAAAATCACCGGTGCGACTGATGCTGCTGCGATGCGCTGCGCATTACCTGGGCCGTGCTCTGGATGACG GCAAACCGCTCGATGCGGTAGCGCGCTTTCACCTCGGCAATGGCGCCCGTATTGAACGGCTCAACTGGGCAGGAGATCCT TCGCCCAAAGGGCTCAAGCAGTCGTATGGCCTGATGGTGAATTACCTCTACGACCTCAAGCGCCTGGACAAGCACCGCGC CATGCTGGCACAGGGGAAAATCCCCGTATCAGGGGAGGTCGAAGATTTGTACATTTGA
Upstream 100 bases:
>100_bases GCGACAGCGAAGGGGCGGAGGCCGCCATGCGCACCCACCTGACGCGCCAGCGTGAAGCGCTGCGCGGCCTGGCTGCCAAC CAGCGTTCGAGGTTGGCATC
Downstream 100 bases:
>100_bases ATGTGTACTTAACATCGATTCCGCACGTCGATTCAGCACATCGATTCCGTATTTTCAGATTCAACAACGTTCAACAACGA CAGGAGACAAAATGACATTC
Product: malonyl-CoA decarboxylase
Products: NA
Alternate protein names: Malonyl-CoA Decarboxylase Superfamily; Malonyl-CoA Decarboxylase Protein; Malonyl-CoA Decarboxylase Superfamily Protein; MCD Malonyl-CoA Decarboxylase MCD; Malonyl-CoA Decarboxylase Family Protein; Decarboxylase
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MSAADWLTRSVSKLRVVPDAGAKMSSEKSPNSAAESTAPATPKASTTPTAPTAPKASPAPAARAGVPAAGDARTPPPVAG RSTRERLNATLRHKEEALSPRVLRRTLEELKAIVDPQVSEVEGGRRAKGVAGWYAGAALNERRDMWLLMSEQFVADAQKV KLAQAQFAAAVGTPDEAVAEVRYRRATVSPRRRLLQRFSAFPEGIRFLVDLRADMLPYLKADKRLQALDVEMEYMFSTWF DVGFLDLRRISWDSPASLIEKLIKYEAVHDIKSWADVKNRLDSDRRCYGFFHPRLPDEPLIFVEVALIDAMSHSITPLLD ESADAVDVNKATTAIFYSISNTQAGLRGVSFGDSLIKRVVETLKEEFPRLRTFATLSPIPGFRSWLAKNAGAMLESLGEK DRVALGRAVGFEPPGVGHFLSAAEGALTLHEKSPVRLMLLRCAAHYLGRALDDGKPLDAVARFHLGNGARIERLNWAGDP SPKGLKQSYGLMVNYLYDLKRLDKHRAMLAQGKIPVSGEVEDLYI
Sequences:
>Translated_525_residues MSAADWLTRSVSKLRVVPDAGAKMSSEKSPNSAAESTAPATPKASTTPTAPTAPKASPAPAARAGVPAAGDARTPPPVAG RSTRERLNATLRHKEEALSPRVLRRTLEELKAIVDPQVSEVEGGRRAKGVAGWYAGAALNERRDMWLLMSEQFVADAQKV KLAQAQFAAAVGTPDEAVAEVRYRRATVSPRRRLLQRFSAFPEGIRFLVDLRADMLPYLKADKRLQALDVEMEYMFSTWF DVGFLDLRRISWDSPASLIEKLIKYEAVHDIKSWADVKNRLDSDRRCYGFFHPRLPDEPLIFVEVALIDAMSHSITPLLD ESADAVDVNKATTAIFYSISNTQAGLRGVSFGDSLIKRVVETLKEEFPRLRTFATLSPIPGFRSWLAKNAGAMLESLGEK DRVALGRAVGFEPPGVGHFLSAAEGALTLHEKSPVRLMLLRCAAHYLGRALDDGKPLDAVARFHLGNGARIERLNWAGDP SPKGLKQSYGLMVNYLYDLKRLDKHRAMLAQGKIPVSGEVEDLYI >Mature_524_residues SAADWLTRSVSKLRVVPDAGAKMSSEKSPNSAAESTAPATPKASTTPTAPTAPKASPAPAARAGVPAAGDARTPPPVAGR STRERLNATLRHKEEALSPRVLRRTLEELKAIVDPQVSEVEGGRRAKGVAGWYAGAALNERRDMWLLMSEQFVADAQKVK LAQAQFAAAVGTPDEAVAEVRYRRATVSPRRRLLQRFSAFPEGIRFLVDLRADMLPYLKADKRLQALDVEMEYMFSTWFD VGFLDLRRISWDSPASLIEKLIKYEAVHDIKSWADVKNRLDSDRRCYGFFHPRLPDEPLIFVEVALIDAMSHSITPLLDE SADAVDVNKATTAIFYSISNTQAGLRGVSFGDSLIKRVVETLKEEFPRLRTFATLSPIPGFRSWLAKNAGAMLESLGEKD RVALGRAVGFEPPGVGHFLSAAEGALTLHEKSPVRLMLLRCAAHYLGRALDDGKPLDAVARFHLGNGARIERLNWAGDPS PKGLKQSYGLMVNYLYDLKRLDKHRAMLAQGKIPVSGEVEDLYI
Specific function: Unknown
COG id: COG1593
COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI110349750, Length=336, Percent_Identity=39.5833333333333, Blast_Score=221, Evalue=1e-57, Organism=Caenorhabditis elegans, GI71985309, Length=409, Percent_Identity=31.5403422982885, Blast_Score=226, Evalue=2e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57724; Mature: 57593
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAADWLTRSVSKLRVVPDAGAKMSSEKSPNSAAESTAPATPKASTTPTAPTAPKASPAP CCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC AARAGVPAAGDARTPPPVAGRSTRERLNATLRHKEEALSPRVLRRTLEELKAIVDPQVSE CHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHH VEGGRRAKGVAGWYAGAALNERRDMWLLMSEQFVADAQKVKLAQAQFAAAVGTPDEAVAE HCCCCCCCCCHHHHHCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH VRYRRATVSPRRRLLQRFSAFPEGIRFLVDLRADMLPYLKADKRLQALDVEMEYMFSTWF HHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH DVGFLDLRRISWDSPASLIEKLIKYEAVHDIKSWADVKNRLDSDRRCYGFFHPRLPDEPL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCE IFVEVALIDAMSHSITPLLDESADAVDVNKATTAIFYSISNTQAGLRGVSFGDSLIKRVV EEEHHHHHHHHHHCCCHHHCCCCCCEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHH ETLKEEFPRLRTFATLSPIPGFRSWLAKNAGAMLESLGEKDRVALGRAVGFEPPGVGHFL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHH SAAEGALTLHEKSPVRLMLLRCAAHYLGRALDDGKPLDAVARFHLGNGARIERLNWAGDP HHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCC SPKGLKQSYGLMVNYLYDLKRLDKHRAMLAQGKIPVSGEVEDLYI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCC >Mature Secondary Structure SAADWLTRSVSKLRVVPDAGAKMSSEKSPNSAAESTAPATPKASTTPTAPTAPKASPAP CHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC AARAGVPAAGDARTPPPVAGRSTRERLNATLRHKEEALSPRVLRRTLEELKAIVDPQVSE CHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHH VEGGRRAKGVAGWYAGAALNERRDMWLLMSEQFVADAQKVKLAQAQFAAAVGTPDEAVAE HCCCCCCCCCHHHHHCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH VRYRRATVSPRRRLLQRFSAFPEGIRFLVDLRADMLPYLKADKRLQALDVEMEYMFSTWF HHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH DVGFLDLRRISWDSPASLIEKLIKYEAVHDIKSWADVKNRLDSDRRCYGFFHPRLPDEPL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCE IFVEVALIDAMSHSITPLLDESADAVDVNKATTAIFYSISNTQAGLRGVSFGDSLIKRVV EEEHHHHHHHHHHCCCHHHCCCCCCEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHH ETLKEEFPRLRTFATLSPIPGFRSWLAKNAGAMLESLGEKDRVALGRAVGFEPPGVGHFL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHH SAAEGALTLHEKSPVRLMLLRCAAHYLGRALDDGKPLDAVARFHLGNGARIERLNWAGDP HHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCC SPKGLKQSYGLMVNYLYDLKRLDKHRAMLAQGKIPVSGEVEDLYI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA