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The map label for this gene is ydhC [H]

Identifier: 91787963

GI number: 91787963

Start: 2176849

End: 2177517

Strand: Direct

Name: ydhC [H]

Synonym: Bpro_2090

Alternate gene names: 91787963

Gene position: 2176849-2177517 (Clockwise)

Preceding gene: 91787962

Following gene: 91787964

Centisome position: 41.86

GC content: 62.63

Gene sequence:

>669_bases
ATGCGACTTGTCCAGAATTCACTGCATCATGAAGTTGCCGATACTTTGCGCGAGCAGATTTTCTCGGGCCAGTTGATGCC
GGGCACGTTTCTCGATGAGGTCGCGCTGTGCGAGAGCCTGAAGATTTCCCGCACGCCGCTGCGCGAAGCGCTCAAGGTCT
TGACGGCGGAGGGCTTGCTACGCCATGAGCCCAGAAGGGGCTGCTTCGTCAACGAAGTGACCGAGCAGGATCTGGACGAC
ATTTTCCCGGTGATTGCGCTGCTGGAAGGCCGCTGCGCCTACGAGGCGGCGCGCAATGCTACCGATGCGGACCTGGCGGA
ACTGACGACCCTGCACGCGCGCTTGAGCAGCCATGCCAAGGCGGGCCGCATCAACGACTACTACGCCACCAATTACGCCA
TTCATGAAGCGATTATTTTGCTGGCCAACAACCGCTGGCTGGCGCAGGCGATTGCCGACCTGCGCAAGATACTGAAGCTG
GCGCGCCTGCAGCAGTTGCGCGCGCCGGGCCGCCTGACCCAAAGCCTGTCGGAACACATGACGGTGTTTGCGGCCCTGAA
AAGCCGCGACAGCGAAGGGGCGGAGGCCGCCATGCGCACCCACCTGACGCGCCAGCGTGAAGCGCTGCGCGGCCTGGCTG
CCAACCAGCGTTCGAGGTTGGCATCATGA

Upstream 100 bases:

>100_bases
CCCCCACAGGTTCGGAGCGGCTTTTTCGCCGTATTTGGGTAGAGGTGCCGCGGCGGCCCGTCAGGGCTATTTTTCAAGTC
AATTTGAGGGAGTTCCTGCC

Downstream 100 bases:

>100_bases
GCGCCGCCGACTGGCTCACTCGAAGTGTTTCCAAGTTGCGGGTTGTGCCCGACGCCGGAGCGAAAATGTCATCCGAAAAA
TCACCAAACTCCGCTGCCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRLVQNSLHHEVADTLREQIFSGQLMPGTFLDEVALCESLKISRTPLREALKVLTAEGLLRHEPRRGCFVNEVTEQDLDD
IFPVIALLEGRCAYEAARNATDADLAELTTLHARLSSHAKAGRINDYYATNYAIHEAIILLANNRWLAQAIADLRKILKL
ARLQQLRAPGRLTQSLSEHMTVFAALKSRDSEGAEAAMRTHLTRQREALRGLAANQRSRLAS

Sequences:

>Translated_222_residues
MRLVQNSLHHEVADTLREQIFSGQLMPGTFLDEVALCESLKISRTPLREALKVLTAEGLLRHEPRRGCFVNEVTEQDLDD
IFPVIALLEGRCAYEAARNATDADLAELTTLHARLSSHAKAGRINDYYATNYAIHEAIILLANNRWLAQAIADLRKILKL
ARLQQLRAPGRLTQSLSEHMTVFAALKSRDSEGAEAAMRTHLTRQREALRGLAANQRSRLAS
>Mature_222_residues
MRLVQNSLHHEVADTLREQIFSGQLMPGTFLDEVALCESLKISRTPLREALKVLTAEGLLRHEPRRGCFVNEVTEQDLDD
IFPVIALLEGRCAYEAARNATDADLAELTTLHARLSSHAKAGRINDYYATNYAIHEAIILLANNRWLAQAIADLRKILKL
ARLQQLRAPGRLTQSLSEHMTVFAALKSRDSEGAEAAMRTHLTRQREALRGLAANQRSRLAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=207, Percent_Identity=25.1207729468599, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081914, Length=189, Percent_Identity=32.2751322751323, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24831; Mature: 24831

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVQNSLHHEVADTLREQIFSGQLMPGTFLDEVALCESLKISRTPLREALKVLTAEGLL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RHEPRRGCFVNEVTEQDLDDIFPVIALLEGRCAYEAARNATDADLAELTTLHARLSSHAK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
AGRINDYYATNYAIHEAIILLANNRWLAQAIADLRKILKLARLQQLRAPGRLTQSLSEHM
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TVFAALKSRDSEGAEAAMRTHLTRQREALRGLAANQRSRLAS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLVQNSLHHEVADTLREQIFSGQLMPGTFLDEVALCESLKISRTPLREALKVLTAEGLL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RHEPRRGCFVNEVTEQDLDDIFPVIALLEGRCAYEAARNATDADLAELTTLHARLSSHAK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
AGRINDYYATNYAIHEAIILLANNRWLAQAIADLRKILKLARLQQLRAPGRLTQSLSEHM
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TVFAALKSRDSEGAEAAMRTHLTRQREALRGLAANQRSRLAS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]