Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is thiO [H]

Identifier: 91785951

GI number: 91785951

Start: 41740

End: 42801

Strand: Direct

Name: thiO [H]

Synonym: Bpro_0038

Alternate gene names: 91785951

Gene position: 41740-42801 (Clockwise)

Preceding gene: 91785950

Following gene: 91785953

Centisome position: 0.8

GC content: 70.34

Gene sequence:

>1062_bases
ATGAGCACTCCTCACATCGGTATCGCAGGCGCAGGCCTGGCCGGCCGCACGCTGGCCTGGCGCCTGTTGCGCGCCGGCTG
CCGCGTGAGCCTGTTCGACGCGCGCCTGCGCGATGACCAGGCCACCGCGTCCATGACGGCGGCGGCCATGCTCTCTCCGC
TGGCCGAGCTGGCGGTGTCGGACGAGGTGGTGTTTGCGCTGGGCCAGCGCTCCATGCAGCTGTGGCCGCGCTGGATCGCG
GAGCTGGCGGCCACGGGCGCACCGCCGGTGTATTTCCGCCAGCAGGGCACGCTGGTGGTGGCGCACGCACCCGACCAGGC
CTCGCTGGAACACTTCACGCGCCTGCTGCATCACAAGCTGCCCGAGGCCTGCCGCGCGCAGGTGCACACGCTCGACAGTG
CGTCGCTCGCGCAGTACGAGCCGGCGCTGGCCGGGCGTTTTGGCGGCGGCCTGTTTCTGGAAAGCGAGGGCCAGCTGGCC
AATGACCAGCTGATGGCGGCGCTGGCGGCGCAGATCGATGCGCTGGGCTGCCACTGGCATGAAGGGCAGCGGGTGGACCG
CCTGGCGCCGCATTTCATCAGCTGCGCCGGCGCCAACTACACCGTCGATGTGGCGGTGGATGCCCGCGGCGTGGGCAGCC
AGGCGGCATGGCCGCAATTGCGCGGCGTGCGTGGCGAGGTGCTCACGGTGGAATGCCCGGGCGTGACGCTGCAGCGCCCG
GTGCGCCTGATGCATCCGCGCTACCAGCTTTATGTGGCACCGCGCCCCGATCACCGTTTTGTGGTGGGCGCGACCGAGCT
GGAGTCGGAAGACACCGGCGCCATGACCTTGCGCTCCATGCTGGAACTGGGCAGCGCCCTGCACAGCCTGCACCCGGCCT
TTGGCGAGGCGCGTGTGGTGCGGCTGGCGGCGGCATTGCGGCCGGCTCTGGACGACCATCGCCCGGCGGTGGCCTTGCGC
GACGGTGTCTGGCATATCAACGGCCTGTACCGGCATGGCTATCTGTGTGCGCCTGCGCTGGTGGAGGAACTGGTCCATCA
ACTGCTGGAGAGCCCGGCATGA

Upstream 100 bases:

>100_bases
GGGCCCGAAATTAAATGAAGTTGTTTCTTTTCATGTGCCGTCGGCCCTCACCCCCGCCCTCTCCCGGCAGGAGAGGGAGT
AAGGCAGAAATACTTTCACT

Downstream 100 bases:

>100_bases
CGGTTATGAACTCTCTTGAAATTTCGCTGAACGGCAAACGCGTGGCCACCGAGGCGCCCACGCTGCAGGCGCTGCTGCTG
GCGCAGGGCTACCCGCTGCA

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MSTPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVSDEVVFALGQRSMQLWPRWIA
ELAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKLPEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLA
NDQLMAALAAQIDALGCHWHEGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRP
VRLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVVRLAAALRPALDDHRPAVALR
DGVWHINGLYRHGYLCAPALVEELVHQLLESPA

Sequences:

>Translated_353_residues
MSTPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVSDEVVFALGQRSMQLWPRWIA
ELAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKLPEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLA
NDQLMAALAAQIDALGCHWHEGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRP
VRLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVVRLAAALRPALDDHRPAVALR
DGVWHINGLYRHGYLCAPALVEELVHQLLESPA
>Mature_352_residues
STPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVSDEVVFALGQRSMQLWPRWIAE
LAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKLPEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLAN
DQLMAALAAQIDALGCHWHEGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRPV
RLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVVRLAAALRPALDDHRPAVALRD
GVWHINGLYRHGYLCAPALVEELVHQLLESPA

Specific function: May have amino acid oxidase activity in the biosynthesis of thiazole when cysteine gives its thiol group to be inserted into the thiazole molecule and the rest of the molecule is deaminated to give pyruvic acid and ammonia [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR012727 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: NA

Molecular weight: Translated: 38207; Mature: 38076

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVS
CCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHC
DEVVFALGQRSMQLWPRWIAELAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHC
PEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLANDQLMAALAAQIDALGCHWH
CHHHHHHHHCCCCCHHHHCCHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
EGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRP
CCCCHHHHCCHHHHCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCHHCC
VRLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVV
HHHHCCCEEEEEECCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLAAALRPALDDHRPAVALRDGVWHINGLYRHGYLCAPALVEELVHQLLESPA
HHHHHHHHHHCCCCCEEEEECCEEEECCHHHCCEEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVS
CCCCCEEECCCCCHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHC
DEVVFALGQRSMQLWPRWIAELAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHC
PEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLANDQLMAALAAQIDALGCHWH
CHHHHHHHHCCCCCHHHHCCHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
EGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRP
CCCCHHHHCCHHHHCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCHHCC
VRLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVV
HHHHCCCEEEEEECCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLAAALRPALDDHRPAVALRDGVWHINGLYRHGYLCAPALVEELVHQLLESPA
HHHHHHHHHHCCCCCEEEEECCEEEECCHHHCCEEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371431 [H]