Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is yqjF [C]

Identifier: 89054988

GI number: 89054988

Start: 2495910

End: 2496278

Strand: Direct

Name: yqjF [C]

Synonym: Jann_2497

Alternate gene names: 89054988

Gene position: 2495910-2496278 (Clockwise)

Preceding gene: 89054987

Following gene: 89054989

Centisome position: 57.8

GC content: 66.67

Gene sequence:

>369_bases
ATGAGCGACGCGCTCGCCCTGGTGGGTCGCCTGCTTCTGGCGTCTCTCATGCTGGCTGGCACGTTGCAGAAAATCGCTGA
CCCCGCGGGTGCGGGCGCGCTTCTGGCCCTCGCGGAACTCCCCCTCTGGCCGCTCTGGCCCGCTGGCCTTTTCACCGCCA
TCGCAGGCCTTGGCCTCGCCCTGGGTGTGCAAACCCGCCCCCTGGCCATCGTCGCTGCCGGATACTGCATCGTCACCAGC
TATTTCCACATCCTCATGGACGACCCCTGGCAGATGACCATCGCCTTCAAGAACTGGACCATTGCGGGCGGCTATCTGAT
GCTCGCGGCCCATGGCCCAGGGCGCTATGCCCTTCGCCCCGCCACGTGA

Upstream 100 bases:

>100_bases
ATCAGGCCCGCATGATCGAGATGCAGGAACGTCAACTGGCCGTCGCCGAGCGCCAGGCCACAGCACAAGAGCGGATCGCC
ACGGCGCTAGAACGCCGCCC

Downstream 100 bases:

>100_bases
GTCGGGGTCCGGGTCAAGGATGCGCAGCACCGCGCTATGCGCGGCGCCAAAGGCGTCCTTGAGGCGGATCGCGACTCGCA
CTCCAACCTTGTACGGGCCT

Product: DoxX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLALGVQTRPLAIVAAGYCIVTS
YFHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRPAT

Sequences:

>Translated_122_residues
MSDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLALGVQTRPLAIVAAGYCIVTS
YFHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRPAT
>Mature_121_residues
SDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLALGVQTRPLAIVAAGYCIVTSY
FHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRPAT

Specific function: Unknown

COG id: COG2259

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12773; Mature: 12642

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LGVQTRPLAIVAAGYCIVTSYFHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRP
CCCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEECEEEECCEEEEEECCCCCEEECC
AT
CC
>Mature Secondary Structure 
SDALALVGRLLLASLMLAGTLQKIADPAGAGALLALAELPLWPLWPAGLFTAIAGLGLA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LGVQTRPLAIVAAGYCIVTSYFHILMDDPWQMTIAFKNWTIAGGYLMLAAHGPGRYALRP
CCCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEECEEEECCEEEEEECCCCCEEECC
AT
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA