Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89054933

Identifier: 89054933

GI number: 89054933

Start: 2433857

End: 2434585

Strand: Direct

Name: 89054933

Synonym: Jann_2442

Alternate gene names: NA

Gene position: 2433857-2434585 (Clockwise)

Preceding gene: 89054929

Following gene: 89054935

Centisome position: 56.37

GC content: 66.8

Gene sequence:

>729_bases
ATGGATACCACACAGGACATGACCCGGACGCGCGCCAGTCTGGACGGTCGGATCACCAGCGTCCTGCGGTACTGGGATGA
TCTGCGTGGCGACCGTGTTGCGCCGGGGCGCATTGAGATCAGCCCCGCCGCCATCAGCCGCCATCTGTCGCGCATCTGCA
TTCTGGAGCGCCCCCGCGCCGGAACCGTGCGTCTGCGCTTGGCCGGAGCGACCGTGTCCAGCCGGGCTGGTATGGAATTG
CGCGGGATGCCGTTTCGCTCGCTCTTCGCGCTGGATGACCGCAACACCGCCATGGATGCGGCGGAAACCGCGATCACCAC
GCCCGCCGTCACCTTCCTGTCCCTTGGCCGCCAGGAGCGGACCGGAACGATGCCCGAGGCCACGATGGCAATCCTGCCCC
TGACCGACACCCGCGGCGCTTTGACCCGCGCCATGGCAATATATGCGGAGCGCGCGTCAATCACGCCCTTCGTGTCGGAC
GTGCGCGGGCGGTTTGTTGTCACCGACAGCTGGTCGTTGGATATCCCGGAAACCGGCCCGATTGTGGGCCCGATGGGCAA
TGTCACGCCAGGGTTCAACGGCGCGGTCGCAGGCGCGCCGATCAAGCCGATCTCCACCCGTGTCTTGCGGCCGCGTCTGG
CCACGCAAACCGAGGCGAGCGTCGTGCCCCAGACGCTTCCGCACCACACGCGCCCAGTCTTTCAGGTCATTGACGGCGGG
CTGGATTAA

Upstream 100 bases:

>100_bases
CAGCCCGGGATAAAGCGGGGCCGCGCAAACCGCCAGGACCGTGTCGGTTCGACAAAACCAGCGCCGCCGACGCAACCGAA
ACCCGATGGAGTGACGTCAG

Downstream 100 bases:

>100_bases
TCCACCCGTCGATATTTCTTCGAGATAACAATATTTTATGATGGTCTTGCGCGCGCCGTTTATTGCAACGGCGCGCGCAT
TTACGTCTACGCTGTAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRAGTVRLRLAGATVSSRAGMEL
RGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQERTGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSD
VRGRFVVTDSWSLDIPETGPIVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG
LD

Sequences:

>Translated_242_residues
MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRAGTVRLRLAGATVSSRAGMEL
RGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQERTGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSD
VRGRFVVTDSWSLDIPETGPIVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG
LD
>Mature_242_residues
MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRAGTVRLRLAGATVSSRAGMEL
RGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQERTGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSD
VRGRFVVTDSWSLDIPETGPIVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG
LD

Specific function: Unknown

COG id: COG5388

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26177; Mature: 26177

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHEEECCCC
GTVRLRLAGATVSSRAGMELRGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQER
CEEEEEEECCCCCCCCCCEECCCCHHHEEEECCCCCHHHHHHHHHCCHHHHHHHCCCHHC
TGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSDVRGRFVVTDSWSLDIPETGP
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCCCCCCC
IVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCCCHHHHCCCCCCCCCCHHHHHHCCC
LD
CC
>Mature Secondary Structure
MDTTQDMTRTRASLDGRITSVLRYWDDLRGDRVAPGRIEISPAAISRHLSRICILERPRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHEEECCCC
GTVRLRLAGATVSSRAGMELRGMPFRSLFALDDRNTAMDAAETAITTPAVTFLSLGRQER
CEEEEEEECCCCCCCCCCEECCCCHHHEEEECCCCCHHHHHHHHHCCHHHHHHHCCCHHC
TGTMPEATMAILPLTDTRGALTRAMAIYAERASITPFVSDVRGRFVVTDSWSLDIPETGP
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCCCCCCC
IVGPMGNVTPGFNGAVAGAPIKPISTRVLRPRLATQTEASVVPQTLPHHTRPVFQVIDGG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCCCHHHHCCCCCCCCCCHHHHHHCCC
LD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA