| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052823
Identifier: 89052823
GI number: 89052823
Start: 338166
End: 338885
Strand: Direct
Name: 89052823
Synonym: Jann_0332
Alternate gene names: NA
Gene position: 338166-338885 (Clockwise)
Preceding gene: 89052822
Following gene: 89052831
Centisome position: 7.83
GC content: 60.14
Gene sequence:
>720_bases ATGAGTAGAATTGGATATCTGATGGGGCAGAATGCTCAAACAGATCGGTCGCGGCGCGGCTATATCACGATTGACTGGCT GGTCCTGGCCGTGGCTGGAATTGCGCTTCTGTTTCTTATGGGAACCCTCGTGCGCACAGCTGCGGATGCCGAGATTCTGG CCTCCGATGGCTTTCATCAGCTCAATGGTGATGACACGTTGCTGGCCTTCCAGGACTTCAGTTTTGATGCGGCGGGATGG GCCCCATCCGAGACGAGCGACCGTGTGCCCGGGATCGGACCTGTCCTCGGGCCGTTCGGGACAGAGCCGGTTCAACGCTC ATTCTCGATGCCCTCAGATGCCACAGTGGCACGGATTTCCTTTGACCTGCATCTGGTCGGGGACTGGACCGGCCAGGGCG CGTTCCATGTGTCCCTTGCCGAGACGGAGGTGGTGGCGATCGAGCTGCCTGACGCGGCGGATCCGGGCGTGGTCGACACG CAGGCCATCCAGAATGACGGCATCATTGTCGGCGTGCAAAGCCATGCCGTCACACCACGTCCGGGAGAGGCGACGCTTCC CGGTGTGGTCGACGATTTTGTGACCGTGAGCCTTGAGATCATCGTGTCTCATCCGGCTGAGACTCTGGCTCTTCGCCTTT TTTCCGAAGTTGGCGGTGGCGCGGAATGGACGCTCGACAACTTTACAGTCGTGGCTACCAGCGGTGATACGCCGTCCTAG
Upstream 100 bases:
>100_bases GGTTCTCGGTACTTTGATGACATGGATTGAACAATGGGGCAAAACTGTCCAATCTTTGCCTTCATTCCGCCACATTTCGA CATTTGGTAAGTGGTGTGTA
Downstream 100 bases:
>100_bases GGGCGGCGCCTACAATCCGGCGTCAAGCAAAGCGCGAATGTCAGCCTCCCGCGTGCCTGCAACGATCCGACCGACCTCTG CCCCATCGCGGAACAACACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MSRIGYLMGQNAQTDRSRRGYITIDWLVLAVAGIALLFLMGTLVRTAADAEILASDGFHQLNGDDTLLAFQDFSFDAAGW APSETSDRVPGIGPVLGPFGTEPVQRSFSMPSDATVARISFDLHLVGDWTGQGAFHVSLAETEVVAIELPDAADPGVVDT QAIQNDGIIVGVQSHAVTPRPGEATLPGVVDDFVTVSLEIIVSHPAETLALRLFSEVGGGAEWTLDNFTVVATSGDTPS
Sequences:
>Translated_239_residues MSRIGYLMGQNAQTDRSRRGYITIDWLVLAVAGIALLFLMGTLVRTAADAEILASDGFHQLNGDDTLLAFQDFSFDAAGW APSETSDRVPGIGPVLGPFGTEPVQRSFSMPSDATVARISFDLHLVGDWTGQGAFHVSLAETEVVAIELPDAADPGVVDT QAIQNDGIIVGVQSHAVTPRPGEATLPGVVDDFVTVSLEIIVSHPAETLALRLFSEVGGGAEWTLDNFTVVATSGDTPS >Mature_238_residues SRIGYLMGQNAQTDRSRRGYITIDWLVLAVAGIALLFLMGTLVRTAADAEILASDGFHQLNGDDTLLAFQDFSFDAAGWA PSETSDRVPGIGPVLGPFGTEPVQRSFSMPSDATVARISFDLHLVGDWTGQGAFHVSLAETEVVAIELPDAADPGVVDTQ AIQNDGIIVGVQSHAVTPRPGEATLPGVVDDFVTVSLEIIVSHPAETLALRLFSEVGGGAEWTLDNFTVVATSGDTPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25180; Mature: 25049
Theoretical pI: Translated: 3.96; Mature: 3.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIGYLMGQNAQTDRSRRGYITIDWLVLAVAGIALLFLMGTLVRTAADAEILASDGFHQ CCCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEE LNGDDTLLAFQDFSFDAAGWAPSETSDRVPGIGPVLGPFGTEPVQRSFSMPSDATVARIS ECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEE FDLHLVGDWTGQGAFHVSLAETEVVAIELPDAADPGVVDTQAIQNDGIIVGVQSHAVTPR EEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCCCEEHHEECCCCEEEEEECCCCCCC PGEATLPGVVDDFVTVSLEIIVSHPAETLALRLFSEVGGGAEWTLDNFTVVATSGDTPS CCCCCCCCHHHHHHEEEEEEEEECCHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCC >Mature Secondary Structure SRIGYLMGQNAQTDRSRRGYITIDWLVLAVAGIALLFLMGTLVRTAADAEILASDGFHQ CCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEE LNGDDTLLAFQDFSFDAAGWAPSETSDRVPGIGPVLGPFGTEPVQRSFSMPSDATVARIS ECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEE FDLHLVGDWTGQGAFHVSLAETEVVAIELPDAADPGVVDTQAIQNDGIIVGVQSHAVTPR EEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCCCEEHHEECCCCEEEEEECCCCCCC PGEATLPGVVDDFVTVSLEIIVSHPAETLALRLFSEVGGGAEWTLDNFTVVATSGDTPS CCCCCCCCHHHHHHEEEEEEEEECCHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA