| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201339
Identifier: 87201339
GI number: 87201339
Start: 3547349
End: 3548014
Strand: Direct
Name: 87201339
Synonym: Saro_3327
Alternate gene names: NA
Gene position: 3547349-3548014 (Clockwise)
Preceding gene: 87201338
Following gene: 87201340
Centisome position: 99.6
GC content: 70.27
Gene sequence:
>666_bases ATGCGACTACTTGCCCTTGCTTCCGTCATGCTTTCCGCCGCGACTCCGGCGACCGCACAGCCCACACCGCTTACCGAAGC GCACCGCACCGACCTGCGCTGCGCCGCCGCATTCGCCATCGTCGCCCTCGAACAGTCGGACGGAGATGCGCTGGAGGGCT GGCCGCCACTTGCCGTCCGCGGCAAGCGCTTCTTCGCGGACACGGGCGAGCGGGTGATGAAGGAGGCCGGGATAAGCCGC GACGCGGTGCGCGACGCGATCGCCGGAGAAGTGCGCAGCCTCCAGACCGCCGCCGATCCCGACGCCGCGCTCACGGCGCT GGCCCGGCCATGCCTCGCCCGGCTCGACGCGTCGGTCCCGCCCCTGAAGGTCCCGGACCTGAAGCAGTGCGCGGCCATCA TGGCGCTCGCCGTCGATGAAGTGCACGCGCGCGAGGGCATGTCGGCGGCGGCGAAGGACCTGAAGACGCTTGCCTCTGTC CTCGCCTCGCGCGAGCGGGAAGCGCTGGTCGCTGCCGGCCGAAGCGGCGACGAGGCCGACCGCACCCTGGCCGAAGCGCG CGAGGCAATGGCTGCGGAAGCCGCCGACGGTGCCGGCGGAGTAGACAAGTACGACATCGCCCATTGCTACGACCTGGCGA AGCCCAACGAGAAATCGCACTATTGA
Upstream 100 bases:
>100_bases AGCGCGCACCCGGCTGCACCACCCCGCCGCTGCGCAATCCCGTACTGGCCGCGAACAGCCCGCTGTTCGCGGCCATTTTT TGTCTCTAGCATACGGCCCG
Downstream 100 bases:
>100_bases GGCAGGCGCAAGCGCTTCCCATATGGGCCCCGAAGGAGAAGCCCCCATGTCCGACCAGCCCGACAAGCTGAACCTTACCG ACGCCGAATGGCGCGAACGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 221
Protein sequence:
>221_residues MRLLALASVMLSAATPATAQPTPLTEAHRTDLRCAAAFAIVALEQSDGDALEGWPPLAVRGKRFFADTGERVMKEAGISR DAVRDAIAGEVRSLQTAADPDAALTALARPCLARLDASVPPLKVPDLKQCAAIMALAVDEVHAREGMSAAAKDLKTLASV LASREREALVAAGRSGDEADRTLAEAREAMAAEAADGAGGVDKYDIAHCYDLAKPNEKSHY
Sequences:
>Translated_221_residues MRLLALASVMLSAATPATAQPTPLTEAHRTDLRCAAAFAIVALEQSDGDALEGWPPLAVRGKRFFADTGERVMKEAGISR DAVRDAIAGEVRSLQTAADPDAALTALARPCLARLDASVPPLKVPDLKQCAAIMALAVDEVHAREGMSAAAKDLKTLASV LASREREALVAAGRSGDEADRTLAEAREAMAAEAADGAGGVDKYDIAHCYDLAKPNEKSHY >Mature_221_residues MRLLALASVMLSAATPATAQPTPLTEAHRTDLRCAAAFAIVALEQSDGDALEGWPPLAVRGKRFFADTGERVMKEAGISR DAVRDAIAGEVRSLQTAADPDAALTALARPCLARLDASVPPLKVPDLKQCAAIMALAVDEVHAREGMSAAAKDLKTLASV LASREREALVAAGRSGDEADRTLAEAREAMAAEAADGAGGVDKYDIAHCYDLAKPNEKSHY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23131; Mature: 23131
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLALASVMLSAATPATAQPTPLTEAHRTDLRCAAAFAIVALEQSDGDALEGWPPLAVR CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHC GKRFFADTGERVMKEAGISRDAVRDAIAGEVRSLQTAADPDAALTALARPCLARLDASVP CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC PLKVPDLKQCAAIMALAVDEVHAREGMSAAAKDLKTLASVLASREREALVAAGRSGDEAD CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH RTLAEAREAMAAEAADGAGGVDKYDIAHCYDLAKPNEKSHY HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRLLALASVMLSAATPATAQPTPLTEAHRTDLRCAAAFAIVALEQSDGDALEGWPPLAVR CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHC GKRFFADTGERVMKEAGISRDAVRDAIAGEVRSLQTAADPDAALTALARPCLARLDASVP CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC PLKVPDLKQCAAIMALAVDEVHAREGMSAAAKDLKTLASVLASREREALVAAGRSGDEAD CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH RTLAEAREAMAAEAADGAGGVDKYDIAHCYDLAKPNEKSHY HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA