| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199469
Identifier: 87199469
GI number: 87199469
Start: 1492815
End: 1493807
Strand: Reverse
Name: 87199469
Synonym: Saro_1448
Alternate gene names: NA
Gene position: 1493807-1492815 (Counterclockwise)
Preceding gene: 87199470
Following gene: 87199468
Centisome position: 41.94
GC content: 62.34
Gene sequence:
>993_bases ATGTCGTTAGTTTCTTTCCTTGCCGCGGCCATCGCCGCCGCTTCAACCCCAAACAGCAATTCCCCGGCGCTTTCGCCGGC AGAAATCGTTGCTGCCGCCCCTGCCACGGACTGGCTCGCGATCGCGCCGGACGACCTTCTGGTCATGGATCTTGCGCCGG ATGCGGCAGGACGTCCGCGCCGCGTGGTGATTCAGGTGGTGCCCGATCCCTTCTCGCAGGGATGGGTCGGCAACATGCGC ATTCTGGCTGCTGCGCACTGGTGGGACGGAACGTCAGTCTACCGCGTCCAGGACAACTGGGTGGCACAATGGGGAGATGC CGATGGGGAGGACGCCGCGAAGGCCCGCCCCCTTCCGCCGGGGCTCGAAGTCGTGCCCGAAAAACGATACGTCATACGCC CGGAGGGGCCGGAACGCAGCGCGACGCACGAAGAACTGGATACCTGGCTTGCCACAATCGAGGGAACCCATGCTGCATGG CACGCTCTGATGCGCAAGAAATCCAAGGATACCGACCCTTATGCGGATGAGACGTTCTTCTATCGCGGATGGCCGCTAGC CGCATCGCAAAACGGACCAAGCGCGTGGCCACTACATTGCTACGGAACCGTTGGCGTAGCGCGCAACCTTTCGCCCGATA CCGGCACCGGTTCCGAACTGTATGCCGTAATAGGCCATGCCCCCCGCCAGCTCGATCGCAACATCGCCGTCGTCGGCAGA GTGATCGAGGGCATTCAACATCTTTCATCATTAACCCGCGGCCCCGCACCGATGGGCGTCTACTCAAACCCCGAGGAGCG CACACCGATAGTGTCCGTCCGCCTCGCAACCGAGGTGCCGGACCTTGGCCGCTTCGAATACCTTTCCACCGAGAGCGCAT CGTTCCGGCAGTATGCGGAAGCCAGCGCGAACCGGCGTGATCCGTTCTTCATCCAGCCTGCGGGCGGCATAGACATCTGT AACCTGAAAGTTCCTGTCAGGCGGGGCATTTGA
Upstream 100 bases:
>100_bases CAAAACGTGAATCAGGCGATCAACCAAATCGCTCTGGAGGGTGCCCCCTAGCTGTACGCGCGCGCTTTCGCAAGCCACCG GTTCCTGCAATGATGCGCAA
Downstream 100 bases:
>100_bases TCCGATGCACAGCCTGACGGTCGTTCTCTGGCGCTGGAGCGGGAGCACAAACGGCGATTGGTTCTTTGTCGGCGTCAACG GACCGGTAGCCGATGCACTT
Product: peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: Peptidyl-Prolyl Cis-Trans Isomerase Cyclophilin Type; Peptidyl-Prolyl Cis-Trans Isomerase Cyclophilin-Type; Peptidyl-Prolyl Cis-Trans Isomerase Family Protein
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MSLVSFLAAAIAAASTPNSNSPALSPAEIVAAAPATDWLAIAPDDLLVMDLAPDAAGRPRRVVIQVVPDPFSQGWVGNMR ILAAAHWWDGTSVYRVQDNWVAQWGDADGEDAAKARPLPPGLEVVPEKRYVIRPEGPERSATHEELDTWLATIEGTHAAW HALMRKKSKDTDPYADETFFYRGWPLAASQNGPSAWPLHCYGTVGVARNLSPDTGTGSELYAVIGHAPRQLDRNIAVVGR VIEGIQHLSSLTRGPAPMGVYSNPEERTPIVSVRLATEVPDLGRFEYLSTESASFRQYAEASANRRDPFFIQPAGGIDIC NLKVPVRRGI
Sequences:
>Translated_330_residues MSLVSFLAAAIAAASTPNSNSPALSPAEIVAAAPATDWLAIAPDDLLVMDLAPDAAGRPRRVVIQVVPDPFSQGWVGNMR ILAAAHWWDGTSVYRVQDNWVAQWGDADGEDAAKARPLPPGLEVVPEKRYVIRPEGPERSATHEELDTWLATIEGTHAAW HALMRKKSKDTDPYADETFFYRGWPLAASQNGPSAWPLHCYGTVGVARNLSPDTGTGSELYAVIGHAPRQLDRNIAVVGR VIEGIQHLSSLTRGPAPMGVYSNPEERTPIVSVRLATEVPDLGRFEYLSTESASFRQYAEASANRRDPFFIQPAGGIDIC NLKVPVRRGI >Mature_329_residues SLVSFLAAAIAAASTPNSNSPALSPAEIVAAAPATDWLAIAPDDLLVMDLAPDAAGRPRRVVIQVVPDPFSQGWVGNMRI LAAAHWWDGTSVYRVQDNWVAQWGDADGEDAAKARPLPPGLEVVPEKRYVIRPEGPERSATHEELDTWLATIEGTHAAWH ALMRKKSKDTDPYADETFFYRGWPLAASQNGPSAWPLHCYGTVGVARNLSPDTGTGSELYAVIGHAPRQLDRNIAVVGRV IEGIQHLSSLTRGPAPMGVYSNPEERTPIVSVRLATEVPDLGRFEYLSTESASFRQYAEASANRRDPFFIQPAGGIDICN LKVPVRRGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35808; Mature: 35676
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS50072 CSA_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLVSFLAAAIAAASTPNSNSPALSPAEIVAAAPATDWLAIAPDDLLVMDLAPDAAGRPR CHHHHHHHHHHHHCCCCCCCCCCCCHHHHEEECCCCCEEEECCCCEEEEEECCCCCCCCC RVVIQVVPDPFSQGWVGNMRILAAAHWWDGTSVYRVQDNWVAQWGDADGEDAAKARPLPP EEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCHHHCCCCCC GLEVVPEKRYVIRPEGPERSATHEELDTWLATIEGTHAAWHALMRKKSKDTDPYADETFF CCEECCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEE YRGWPLAASQNGPSAWPLHCYGTVGVARNLSPDTGTGSELYAVIGHAPRQLDRNIAVVGR EECCCEECCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHH VIEGIQHLSSLTRGPAPMGVYSNPEERTPIVSVRLATEVPDLGRFEYLSTESASFRQYAE HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHH ASANRRDPFFIQPAGGIDICNLKVPVRRGI HCCCCCCCEEEECCCCEEEEEEECCHHCCC >Mature Secondary Structure SLVSFLAAAIAAASTPNSNSPALSPAEIVAAAPATDWLAIAPDDLLVMDLAPDAAGRPR HHHHHHHHHHHHCCCCCCCCCCCCHHHHEEECCCCCEEEECCCCEEEEEECCCCCCCCC RVVIQVVPDPFSQGWVGNMRILAAAHWWDGTSVYRVQDNWVAQWGDADGEDAAKARPLPP EEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCHHHCCCCCC GLEVVPEKRYVIRPEGPERSATHEELDTWLATIEGTHAAWHALMRKKSKDTDPYADETFF CCEECCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEE YRGWPLAASQNGPSAWPLHCYGTVGVARNLSPDTGTGSELYAVIGHAPRQLDRNIAVVGR EECCCEECCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHH VIEGIQHLSSLTRGPAPMGVYSNPEERTPIVSVRLATEVPDLGRFEYLSTESASFRQYAE HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHH ASANRRDPFFIQPAGGIDICNLKVPVRRGI HCCCCCCCEEEECCCCEEEEEEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA