Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609717

Identifier: 86609717

GI number: 86609717

Start: 2380544

End: 2381206

Strand: Reverse

Name: 86609717

Synonym: CYB_2275

Alternate gene names: NA

Gene position: 2381206-2380544 (Counterclockwise)

Preceding gene: 86609720

Following gene: 86609716

Centisome position: 78.16

GC content: 47.36

Gene sequence:

>663_bases
ATGGCAGCACAGCAAGCTCCGGCCCGAGAGCTATTCAAGGAGGCTTTTGAGAATCGCTACACCTGGGACAAAGACTTTCC
TGGCTACCGAGCTGAGATAACCTACTTTCCCAAAGAAGGTGACAGCAGCCTCTCCTTCTCAGGAGTTGTGAGTATTGACC
GCAACATGAAGATCGATGTTGCCGGCGTCGAGGACGAGGAGATCCGCCAGAAAATACGGGAACAGATGTGGGAAGTCATG
GTGCATCGCGTTCGTCATTCCTTCGACGAGGAACACGGTGGCCACACCTTTGCCTATGGAGAGCCACAAAATTCAGACAT
CACTGAAGTTCTTGTTTCGGGCTTATCTTCTACCGATAGGTACTGGGTTCAGGGCAAGCACATTCAAATGGTACATCGCC
ATCTTGCCAATCGGACAATTACAGTCTCAGTTCAAGAGTTTTACGATACAGGTGAGGGCTACCTACCCACTCACTACACT
GCTGAGTATTGTAGCCCAGGAACTGGAGAAAAAACTCAAGCAAAGATGATCTACGAAGATCGTTATCAAAAAATAGGTCG
GTATTGGATTCTGGTTGAGAGAAGAATTTGGGAAGAGCAGGATGGCCAAAAAAGTTCATCCCCTCAACTTTTCCTCTTCT
CTAATATTCGATTTTTCGAATAG

Upstream 100 bases:

>100_bases
TGAGCGGGTGGCCAGTCATAAGGAAACCTTAAAATCCCAAGGCCAGCCATCAGCCTCTACTAGGATTTAAATAGTAAAAT
TTCTCATTAAGGAGGAGATT

Downstream 100 bases:

>100_bases
CTGAGAAAAATAAGTTTTTCTTTGCGGCTGTGGGCATCTCTCATTATAGAAGGTGATGAGTTGCTCACAGCCAAGCTCAA
AACAGATGGCCACAGGGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDVAGVEDEEIRQKIREQMWEVM
VHRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDRYWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYT
AEYCSPGTGEKTQAKMIYEDRYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE

Sequences:

>Translated_220_residues
MAAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDVAGVEDEEIRQKIREQMWEVM
VHRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDRYWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYT
AEYCSPGTGEKTQAKMIYEDRYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE
>Mature_219_residues
AAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDVAGVEDEEIRQKIREQMWEVMV
HRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDRYWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYTA
EYCSPGTGEKTQAKMIYEDRYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25830; Mature: 25699

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDV
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEE
AGVEDEEIRQKIREQMWEVMVHRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDR
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCCCE
YWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYTAEYCSPGTGEKTQAKMIYED
EEECCCHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHH
RYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE
HHHHHCCEEEEEEHHHHCCCCCCCCCCCEEEEEECCEECC
>Mature Secondary Structure 
AAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDV
CCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEE
AGVEDEEIRQKIREQMWEVMVHRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDR
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCCCE
YWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYTAEYCSPGTGEKTQAKMIYED
EEECCCHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHH
RYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE
HHHHHCCEEEEEEHHHHCCCCCCCCCCCEEEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA