| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608168
Identifier: 86608168
GI number: 86608168
Start: 696771
End: 697595
Strand: Reverse
Name: 86608168
Synonym: CYB_0682
Alternate gene names: NA
Gene position: 697595-696771 (Counterclockwise)
Preceding gene: 86608169
Following gene: 86608165
Centisome position: 22.9
GC content: 62.18
Gene sequence:
>825_bases GTGGGCCTGCTGATTGCAAAACTCAAGGCTTTGCCCTTGCCGCTGCGGCTGTTGCTGTTTTTGGGGATCCCCCTCCTAGC CTGGCTGCCGTGGGTCGGGCTGGGGGGGTGGTTTTTTCCGGAAGCGCGAGCCTACCTGTGGCTGCCCCTGTATGCCTTGC TGCTGGTCTGGCTGGGGCTGTGGGGATCTGGATTTGCTGCCTATGGGCTAGATAGCAGTTGGGCCTGTCGGGGCGGGATC CTCTGGGGCCTGGGGATCGGGGTCGGGGGGCTTTTCTTGCTTTTGGGCCTGGAGGGATCCCTGGGTTGGCTGAGTTGGAG GGCGGTAGGAGGGGGATCCCTGCTGGTCTATGGGTTGCTGGGGTTGCTTTTGGGCTTGGGGGTGGCGCTGGCGGAGGAGC TGTTTTTTCGCGGCTGGCTGCTGCAGGAGATGCTGCTGGACTACGGTTGCAGCACTGCGGTGTGGGGATCCAGCTTCCTG TTTGCTATGGCCCATTTCCTGAAGCCTTTGCCTGAGATTCTCGCCACCTGGCCGCAATTTCCCGGACTGTGGCTGATGGG GCTGCTGCTGGTGCAGGCGAGGGTCTGGAACCAAAACAAGCTGGGCTTAAGCCTGGGGCTGCACGCGGGTTGGGTATGGG GCATGGTCTGGGTCAACAACTTGGCCTGGATAGACTACACCGGCAGGGTGCCCGAGTGGCTGACCGGGATCGGCGGCAAC CCCTTGGCCGGGCTGATGGGCTTGCTTTTTCTAGGAGGGACTTTCGCATTTCTCAACGGCCTGGCTCAAGCTGGCTGGCT ACCGGCAGACCTGGAAAAGCGTTGA
Upstream 100 bases:
>100_bases CGTGGTGCCGCGGGAGCACGCGGAGTTTTACTGTGAGCAGTTGCGTCAGCACGGCCTCACCAGCTCCATTGAGCCGGAAC GCTAAGCAGGAGCGGTTGGG
Downstream 100 bases:
>100_bases TTGAGCTGATCGATAAAGAATAACCTACTCTCCCCAAGGCCCTTCCTCGTAGTAGGCGGTCACCTGCTCCTTGGGCGGCT GGGTAAGCAAGCTTACGCCA
Product: CAAX amino terminal protease family protein
Products: NA
Alternate protein names: CAAX Amino Terminal Protease Family; CAAX Amino Terminal Protease Family Protein; Abortive Infection Protein Like
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MGLLIAKLKALPLPLRLLLFLGIPLLAWLPWVGLGGWFFPEARAYLWLPLYALLLVWLGLWGSGFAAYGLDSSWACRGGI LWGLGIGVGGLFLLLGLEGSLGWLSWRAVGGGSLLVYGLLGLLLGLGVALAEELFFRGWLLQEMLLDYGCSTAVWGSSFL FAMAHFLKPLPEILATWPQFPGLWLMGLLLVQARVWNQNKLGLSLGLHAGWVWGMVWVNNLAWIDYTGRVPEWLTGIGGN PLAGLMGLLFLGGTFAFLNGLAQAGWLPADLEKR
Sequences:
>Translated_274_residues MGLLIAKLKALPLPLRLLLFLGIPLLAWLPWVGLGGWFFPEARAYLWLPLYALLLVWLGLWGSGFAAYGLDSSWACRGGI LWGLGIGVGGLFLLLGLEGSLGWLSWRAVGGGSLLVYGLLGLLLGLGVALAEELFFRGWLLQEMLLDYGCSTAVWGSSFL FAMAHFLKPLPEILATWPQFPGLWLMGLLLVQARVWNQNKLGLSLGLHAGWVWGMVWVNNLAWIDYTGRVPEWLTGIGGN PLAGLMGLLFLGGTFAFLNGLAQAGWLPADLEKR >Mature_273_residues GLLIAKLKALPLPLRLLLFLGIPLLAWLPWVGLGGWFFPEARAYLWLPLYALLLVWLGLWGSGFAAYGLDSSWACRGGIL WGLGIGVGGLFLLLGLEGSLGWLSWRAVGGGSLLVYGLLGLLLGLGVALAEELFFRGWLLQEMLLDYGCSTAVWGSSFLF AMAHFLKPLPEILATWPQFPGLWLMGLLLVQARVWNQNKLGLSLGLHAGWVWGMVWVNNLAWIDYTGRVPEWLTGIGGNP LAGLMGLLFLGGTFAFLNGLAQAGWLPADLEKR
Specific function: Unknown
COG id: COG1266
COG function: function code R; Predicted metal-dependent membrane protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29859; Mature: 29728
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLIAKLKALPLPLRLLLFLGIPLLAWLPWVGLGGWFFPEARAYLWLPLYALLLVWLGL CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH WGSGFAAYGLDSSWACRGGILWGLGIGVGGLFLLLGLEGSLGWLSWRAVGGGSLLVYGLL HCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH GLLLGLGVALAEELFFRGWLLQEMLLDYGCSTAVWGSSFLFAMAHFLKPLPEILATWPQF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PGLWLMGLLLVQARVWNQNKLGLSLGLHAGWVWGMVWVNNLAWIDYTGRVPEWLTGIGGN CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHCEEEEEECCCCHHHHHCCCCC PLAGLMGLLFLGGTFAFLNGLAQAGWLPADLEKR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure GLLIAKLKALPLPLRLLLFLGIPLLAWLPWVGLGGWFFPEARAYLWLPLYALLLVWLGL CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH WGSGFAAYGLDSSWACRGGILWGLGIGVGGLFLLLGLEGSLGWLSWRAVGGGSLLVYGLL HCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH GLLLGLGVALAEELFFRGWLLQEMLLDYGCSTAVWGSSFLFAMAHFLKPLPEILATWPQF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PGLWLMGLLLVQARVWNQNKLGLSLGLHAGWVWGMVWVNNLAWIDYTGRVPEWLTGIGGN CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHCEEEEEECCCCHHHHHCCCCC PLAGLMGLLFLGGTFAFLNGLAQAGWLPADLEKR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA