Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608006

Identifier: 86608006

GI number: 86608006

Start: 526113

End: 527378

Strand: Direct

Name: 86608006

Synonym: CYB_0513

Alternate gene names: NA

Gene position: 526113-527378 (Clockwise)

Preceding gene: 86608005

Following gene: 86608007

Centisome position: 17.27

GC content: 58.45

Gene sequence:

>1266_bases
ATGCTTGAACATCTCCATCTCGACCGCAACCGCAAGCTGATCTCCCTGTTTGGAGAGCCGGTTATCTTCCACTGCCATCA
CTACAACCTCTTCCTGCAGCAGACTATTGAAGATCCCGACTGGATCGATGGAGTAGGGATCCTGCGCACGGCAGCCCAGG
AGATCTTTTACAGTCTTCTGTACGGAGCTTTCAAGGCTCTTGGCATTCAGGAGACCCAAGAGCGCCTGGCAGTGGCAGCT
CAGATCTTCAGTTTTTTAGGATTTGGGCGGCTGGCGTTTGAGGTGACACCTTCAGGCGGGGAAGTGCAGCTTACCCATTC
TCACTATGCAGAAGGTTGGCTGAGCAAGTACGGAGAGCAGGTCAGCCGCACGCGCCCGATTGACCACTTGGCGGTGGGCT
ATGTGGCGGCAGCTCTGGATGCCACGTTTGGCGAGCTGGGAAGCTACACGGCAGAAGAAACGGAGTGCATGGCCGTTACC
CGTAAGGATCACTGCGTGATCCAGGCCACTCGGCTGCCGCGGCCCCAGTTGTTGACTCCCAGTCCAGGGATGGGCAAGTT
GATCGAGCAGCCGCTCCAGTTCCCCCGGCCCACAACAGCAGTGGACTACGATGCGGTCAACGAAGCTCTGTGGGGCTTGC
CTTTGGCCGGAGATGAGCGGGGGCAAATTCGCGCGTTTAACGTGTTGCTAACGCGCATGCCTGCCAACTACTACAACCGC
ATTCAGTATCGCTTTTTACAGGAGCTGAAGGCGGTGCAGGCTGAGCTGATGGGGGTGGGGGAAGCTCTCATCCGCGAGTC
GGGGCATGTTTGTGTCTTCTACACCTTTGGCAACATCATGGAATCGGTGGAGTGGGAAACCCTTGTGGGGCCGATGCTGG
AGAAAGACACCGACTGGATCCACGGCGGCTATGCGGTGGCCAGCAGCCTGGGGTGGGGTCGCTGGCAGGCTTTGGAGGTG
GTGAGTGGCCAGTCTTGCCGGGTGGCCATTGATGGCAACTACGAAGCCAACTACTTTTTGGCTTCCTACCCACGGGCAGA
AGATCCCGCCTGCTATTTTGCTCAAGGGGCGGTGCCGGCGATGATGAATCTGGTCTACAACGGCAACATCCAGCAGAAGC
CGGTTTTGGATCAAGTCTTCTACAACCGCCTCTTCCAGCGGGGTGGGCTCTTCCACGGCCAGGAGACCAAGGCCAGAGAG
AAGGGGGATCCCTGGTGCGAGTTCTACGCCGCTCGCGTCAGCGGGACGGAGTCCTTGCGGATGTAG

Upstream 100 bases:

>100_bases
GTTTGAGTAGTCGAGAATGGCTGGCGAGCTTTGCCTGAGGGCAGTTGCCGCGCTCAGGGGCCTGCTTTGAGCACTATCAT
TCATCTCAACCCACTTGTCC

Downstream 100 bases:

>100_bases
GGATCCATGCAGGTGCGTATCCTCAGGCGGCGGGAGTGTGGAGCGGGGTGGGCCACTGACCTGCTGCTGCCGCGCTGCCT
TGCCTGGTCGGAGGTAGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLLYGAFKALGIQETQERLAVAA
QIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQVSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVT
RKDHCVIQATRLPRPQLLTPSPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR
IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWIHGGYAVASSLGWGRWQALEV
VSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPAMMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKARE
KGDPWCEFYAARVSGTESLRM

Sequences:

>Translated_421_residues
MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLLYGAFKALGIQETQERLAVAA
QIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQVSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVT
RKDHCVIQATRLPRPQLLTPSPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR
IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWIHGGYAVASSLGWGRWQALEV
VSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPAMMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKARE
KGDPWCEFYAARVSGTESLRM
>Mature_421_residues
MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLLYGAFKALGIQETQERLAVAA
QIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQVSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVT
RKDHCVIQATRLPRPQLLTPSPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR
IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWIHGGYAVASSLGWGRWQALEV
VSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPAMMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKARE
KGDPWCEFYAARVSGTESLRM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47327; Mature: 47327

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLL
CCCCEECCCCCHHHHHCCCCEEEEEECCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
YGAFKALGIQETQERLAVAAQIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQ
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHH
VSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVTRKDHCVIQATRLPRPQLLTP
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
SPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHCCHHHHHH
IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCHHHHHHHHHHCCCCEE
HGGYAVASSLGWGRWQALEVVSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPA
CCCHHHHHCCCCCCCEEEHEECCCCEEEEECCCCCCCEEEEECCCCCCCCEEEECCCHHH
MMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKAREKGDPWCEFYAARVSGTESLR
HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHCCCCHHCC
M
C
>Mature Secondary Structure
MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLL
CCCCEECCCCCHHHHHCCCCEEEEEECCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
YGAFKALGIQETQERLAVAAQIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQ
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHH
VSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVTRKDHCVIQATRLPRPQLLTP
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
SPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHCCHHHHHH
IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCHHHHHHHHHHCCCCEE
HGGYAVASSLGWGRWQALEVVSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPA
CCCHHHHHCCCCCCCEEEHEECCCCEEEEECCCCCCCEEEEECCCCCCCCEEEECCCHHH
MMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKAREKGDPWCEFYAARVSGTESLR
HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHCCCCHHCC
M
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA