Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86607789

Identifier: 86607789

GI number: 86607789

Start: 302622

End: 304169

Strand: Direct

Name: 86607789

Synonym: CYB_0290

Alternate gene names: NA

Gene position: 302622-304169 (Clockwise)

Preceding gene: 86607788

Following gene: 86607791

Centisome position: 9.93

GC content: 60.79

Gene sequence:

>1548_bases
GTGTCTCAACCTGATGATGGGATGGCCGGAAACGTTGGGTTTGCCTCGGCTGGCGTTTTACCCCTAGCTATAATGCCGGT
AATCCCCTTGAAGCGGATTCTGTCCATGTCTGAACCCCTGAATCCCCCTTTCCATTCCGAGCCCCAAAACGCCTCGCCCA
GCTCAAAGGTTGCCTCAGATGCCGTCAATGGCGCTGCTGAGGGCCTGAACTGGGAGGAGCTGTGGCGGCAGCTGGAAGCG
GGCTGGCAGGATCTACCCCGTCGCTCCGAAGAGACGGTGCAACAGACCCTGGCTCGCCTGCAACTGGAGTGGGGCGGGCT
GTGCCGAGAGGCGCGGGATCGGCTGCAAAGCGCTCTGGAACAGTCGAGAACGGCGGGATCCCCAGAGCCCGTCCACCGAG
AGCTGCAAGCGCTCTTGCCCCTGCTCAACCCCTGCCAATGGGAAGTGGTCATCGGCTCTTTGCGGCGGGCTGCAGATCGA
GCTTGGGTGGCCAGCTTGCTGTATCACGGCTTGCAGGAAGCGGCCTATCCAGAGGCGGAAAGCCACGGGATCCCTTCTTG
GGCTCGGACGCTGACCTCTGACCAACGCTCTGCTCTGGAGGCGATGAGTGCCCGTGCCTATGGCAACAGCCGCCTGCCTT
TGGTGATGGACAAAAGCGGCCAGATTCAAGTAAAGGCCTCAGCCGCCTTGTTGGCCGCCTTGATCGCCATCGAGATCGGC
AGTGTGGGTTCGGCAGGTGCCTTGTCCTTGCTGGGCACACCGGAGCTGCGCAAGCTCTTGAATGCCGAGGGCAAGCTGCG
GCGAACTGGCTTAAAACAGGGACGAACTGCCCTCACAGAAGAAGAATGGCAAACGCTGCGCCGTTGGCTGGATCCCAAGG
GATCCCCCCCCGACTGGTATCTCAATCTGACCCAAGTGGGGATCCAGACCACCCAAGTGGGGGACTATGCGGCACGGCGG
CTGCGGGAGTTTTTCCAGAGTGAGTGGATTAAGCTCGTGATCCCCCCCTTGTATCACCTGGTCATCGATGCAGTGCGGCT
ACTGACGGGAGAAGTGTTTCTCAGCGTGGGCACCACCCTGGAATCGGCTTTGGAATCGGCAGAGGCAGGGCGGCGACTGG
AGTTGGTGCTGCAAGCCTTGCCCCAAGCGCGGAACATTCCCAGACCCAACCAGATCCAGGCTGCCATCCCTGCTGTGGTG
GAAGCTGCCGAGAAACTCCTCAGACCTCTGCTGGCCCGCCAGTTGATGACCGTGGCGGACATCTTCGATCCGCCCATTCG
CAACGAGAGCCTAAATGAATTGGGGCGGCAGCTCAACCTCTGGAACCCCTTCCAGTTTTTGCTCACCTGGAGCACGGCCG
GCTGGCTGGAGGCCCTTCTGGATCAGATCAGCGAGTTGCAGCAGACCTACCCAGAAATGCCCCTGTGGGAGAGCTATCGC
CAGGGCCTTGAAACGGCAGTGCAAGCTCCACGGGTGATGGATCAGGCGGAGGCTCTGCGTCTAACGGCCAAGAGTCTGGA
TCCCAAGTTGGATCCCTTGGAAGATTGA

Upstream 100 bases:

>100_bases
CCTGCATGATCGGGGTGGAGGTGGACAGCCGCACCAACCGCGTTATCGTCCTGTCGGTGATCGATAACCTGATGAAAGGG
CAAGCCGGGCAGGCAGTGCA

Downstream 100 bases:

>100_bases
GTAGATGATGCATAGGGAAGAAAATTTCCTACAGCATCCACAAAGTGAGGCTGGCAGGCTAGGTGGAATCTTTTCTACGC
CAAAGACAAATCTGCACGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASDAVNGAAEGLNWEELWRQLEA
GWQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALEQSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADR
AWVASLLYHGLQEAAYPEAESHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIG
SVGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWYLNLTQVGIQTTQVGDYAARR
LREFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTLESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVV
EAAEKLLRPLLARQLMTVADIFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYR
QGLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED

Sequences:

>Translated_515_residues
MSQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASDAVNGAAEGLNWEELWRQLEA
GWQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALEQSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADR
AWVASLLYHGLQEAAYPEAESHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIG
SVGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWYLNLTQVGIQTTQVGDYAARR
LREFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTLESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVV
EAAEKLLRPLLARQLMTVADIFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYR
QGLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED
>Mature_514_residues
SQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASDAVNGAAEGLNWEELWRQLEAG
WQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALEQSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADRA
WVASLLYHGLQEAAYPEAESHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIGS
VGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWYLNLTQVGIQTTQVGDYAARRL
REFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTLESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVVE
AAEKLLRPLLARQLMTVADIFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYRQ
GLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57003; Mature: 56872

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASD
CCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
AVNGAAEGLNWEELWRQLEAGWQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALE
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADRAWVASLLYHGLQEAAYPEAE
HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
SHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHC
SVGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWY
CCCCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHCHHHCCHHHHHHHHHHHCCCCCCCCCE
LNLTQVGIQTTQVGDYAARRLREFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTL
EEHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVVEAAEKLLRPLLARQLMTVAD
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYR
HCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QGLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASD
CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
AVNGAAEGLNWEELWRQLEAGWQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALE
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADRAWVASLLYHGLQEAAYPEAE
HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
SHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHC
SVGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWY
CCCCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHCHHHCCHHHHHHHHHHHCCCCCCCCCE
LNLTQVGIQTTQVGDYAARRLREFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTL
EEHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVVEAAEKLLRPLLARQLMTVAD
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYR
HCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QGLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA