Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86606720

Identifier: 86606720

GI number: 86606720

Start: 2100756

End: 2101133

Strand: Reverse

Name: 86606720

Synonym: CYA_2080

Alternate gene names: NA

Gene position: 2101133-2100756 (Counterclockwise)

Preceding gene: 86606721

Following gene: 86606718

Centisome position: 71.64

GC content: 58.99

Gene sequence:

>378_bases
GTGGTACACTACCGCTACGGTGAGTTGGTCAGATTGATGGCAGGGATCCCTCATTTCTATTGGCGTTGGGCTAGGTGGGC
TACACCGGCTCTGTGGGCGTTGCTGCTGTCGCCTGCTCCTATGGCTTGGGCTTCTGCTCTGGAGGTGCCTCAATTTGATC
TGAGTGTTGTCCGCTCTCGTTCTTTGCCGTGGCGGCACCCGCTCCCTTGGCCAGAGATAGGGGATCCCAACCCATCTGAA
GCTGAGGTCGAGGCGGCGGAGCATCTTTTCTTGGAGTTCACCCTCGAAGAGAGCAACGCCGCCATTGCCCTGTTCGGGTG
TGATTGCCCAGCCCATATCAACCAACTGCGACGACTGCGCGGCCTGCCCTTGCTGTGA

Upstream 100 bases:

>100_bases
TGCTATTGTACCCCTTGAGTCCTTAACAGGCTGTAAGCTCAACCACTTTACGGTCATTTCGGCTGATGGAGTTTCTCTTT
CCTGACAGAAGCCAAAACCA

Downstream 100 bases:

>100_bases
ACGGGGGAGAGCTGACGGCCCCTCTGAACAGCACAGTTTGTATATTGCTAAGGCTGAGGTTCTCCCCCTGCTCAGTAGCC
TGCTTCCGCGCTTCAGTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MVHYRYGELVRLMAGIPHFYWRWARWATPALWALLLSPAPMAWASALEVPQFDLSVVRSRSLPWRHPLPWPEIGDPNPSE
AEVEAAEHLFLEFTLEESNAAIALFGCDCPAHINQLRRLRGLPLL

Sequences:

>Translated_125_residues
MVHYRYGELVRLMAGIPHFYWRWARWATPALWALLLSPAPMAWASALEVPQFDLSVVRSRSLPWRHPLPWPEIGDPNPSE
AEVEAAEHLFLEFTLEESNAAIALFGCDCPAHINQLRRLRGLPLL
>Mature_125_residues
MVHYRYGELVRLMAGIPHFYWRWARWATPALWALLLSPAPMAWASALEVPQFDLSVVRSRSLPWRHPLPWPEIGDPNPSE
AEVEAAEHLFLEFTLEESNAAIALFGCDCPAHINQLRRLRGLPLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14324; Mature: 14324

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00196 COPPER_BLUE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHYRYGELVRLMAGIPHFYWRWARWATPALWALLLSPAPMAWASALEVPQFDLSVVRSR
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC
SLPWRHPLPWPEIGDPNPSEAEVEAAEHLFLEFTLEESNAAIALFGCDCPAHINQLRRLR
CCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC
GLPLL
CCCCC
>Mature Secondary Structure
MVHYRYGELVRLMAGIPHFYWRWARWATPALWALLLSPAPMAWASALEVPQFDLSVVRSR
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC
SLPWRHPLPWPEIGDPNPSEAEVEAAEHLFLEFTLEESNAAIALFGCDCPAHINQLRRLR
CCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC
GLPLL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA