Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86606718

Identifier: 86606718

GI number: 86606718

Start: 2096672

End: 2098180

Strand: Reverse

Name: 86606718

Synonym: CYA_2078

Alternate gene names: NA

Gene position: 2098180-2096672 (Counterclockwise)

Preceding gene: 86606720

Following gene: 86606717

Centisome position: 71.54

GC content: 68.26

Gene sequence:

>1509_bases
ATGGTAAGCGGAGCGCTGGCGATTGGGGCTGCAATTGGCTTGGTGGTTTTGCTGTTGGAAGCGATTCGCTATCGCCGCTG
GGGATCCCTTCGCCGTTGGCAGCCGGCAGTGGGGCTGGGCTTGGCAGCCTTGGCGGCGCTGGGGGCAGGGCTGGGACAGT
TGTCGGAGCCGATCCCGCTAGCGGTGTTGCTGGGGGGACTGGTGGGGTTGGGTCTGCTGGGCTTGAGCGGCTGCGGGCGG
GCCGGGCAGGGGCTGGCGGTGCTGCTGCTCAGCTTGGCCAGCGTGTGGGGCCTAGCCCGCGGTGCTTTCGAGGAATCTGA
GGCGGGAGCTGCTTTTTCTCTGCTGCTGTGGGGCTGCGGCCTGGGGATGGGCTTGGTGGGGATCCCGTTGCTGGGCTGCT
TGGCCGAGGCGGAGATGCTGTCTGTGCTGATGGGTCTGGGCCAGGGCTGGAGCGGCATCGCCGCCTTGACCTGGGGATCC
CGCCTGCTGGAGATGGGCTCCCCCCAAGATCTCCCTTGGTCGGTGCTGCTGCCGGTGGGGCTGGCTGCCCTCAGCCTGGT
GGCGGGCACGCTGCCCCTGCTGATCCTCCCCGTTCCCGCCAGCGGGACGGAGTCCTCGCGCGACAGCGAGGTGGGCTCCA
ACCGGCTGCTGTCGGCCCTGGGGCACGGTGTGGGATGGCTGGTGGCGACGGCGCTGGCTTTGGCCCTGGTGCGCAACGGG
CTGTACCAGGATCCCTTTTGGGCGCTGCTGTACGGGGCGGGGGTGCTGCTCTCGTGGGCTCTGCTGGCTTTGGAGGGCGG
GATCCCGGCACCCGAGGGGAAAGAGGCCTTGCTCTGGCGGGCCTGTGTGAGCCTGACGCTGGTAGGCGGTGGGGCGCTGC
TGGCGCTGCGGCTGGGGGGATCCTACGGGGCGGCGCTGCTGGGGCTGGGGTGTCTGGCTTTTCCCAGCCGCTGGGGGGCA
ATGGCCGCCCTGTTTTTGTCGGCCCAACCCCTGCTGCAAAACCTGCTGCACCAGTTCAACCTGCAGGTGGCCGGGATCGA
CCTCACCCAGCCCTATGTGGCGGCGGCGCTGTACCTGGGCATGGCGAGCATGGGGCTGGCAGCGCTTGTCCACTGGGTGT
ACGGGCAAGACAGGCCGCTGCCGACGGGGATCGGCCTGACGCTGGCCAGCCTGCTCCTGCCGCTGGGGGTGGGCTATTTC
GTCCACGCCCAGCCGCAGGCGGCCTTCTTGCTGGCAGCCTTGATCACCGCCTTGATCTTGGCAGCGCTGCAGCCCATAGC
CCTAAACCAAGAAAGGGGAAGGGCACCTTGGACAGGGACCCAAGCTTTGGGCCTGGCTATGCTTGCCATTTTGGGCTCCA
ACCTCAGCCGCAACTGGACGGTGACGGGGTTCTATGCCACCCGCCTGGAGCGGGCCCTGGTGCTGGTGGTTCTCGTCGGG
ATCCTGGTTCTCTGCCTCTTGCTTGGGCAGGGCTGGCGCCTGTGGCAGTCCAGGACTGCATCCCGCTAA

Upstream 100 bases:

>100_bases
TTCTGTCAACCCTTTTGCCGTTTGCGCCAGCGGGACGGAGTCCTTCGATGGCCAGACCAAGATCGGCGATAGTTGAGGAA
GGGTTGGTCAGGAGGGGGAG

Downstream 100 bases:

>100_bases
ATGCCCACCCTCGCCTGTTGGGGCTCCCAGACCGTGAAACCTGTTCCTCTCGGCACCCGCGGCACCTGGCAAGGGATCCC
CGGCCCCGAGCAAACGGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPLAVLLGGLVGLGLLGLSGCGR
AGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCGLGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGS
RLLEMGSPQDLPWSVLLPVGLAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG
LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGGSYGAALLGLGCLAFPSRWGA
MAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLGMASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYF
VHAQPQAAFLLAALITALILAALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG
ILVLCLLLGQGWRLWQSRTASR

Sequences:

>Translated_502_residues
MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPLAVLLGGLVGLGLLGLSGCGR
AGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCGLGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGS
RLLEMGSPQDLPWSVLLPVGLAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG
LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGGSYGAALLGLGCLAFPSRWGA
MAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLGMASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYF
VHAQPQAAFLLAALITALILAALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG
ILVLCLLLGQGWRLWQSRTASR
>Mature_502_residues
MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPLAVLLGGLVGLGLLGLSGCGR
AGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCGLGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGS
RLLEMGSPQDLPWSVLLPVGLAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG
LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGGSYGAALLGLGCLAFPSRWGA
MAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLGMASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYF
VHAQPQAAFLLAALITALILAALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG
ILVLCLLLGQGWRLWQSRTASR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51705; Mature: 51705

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHH
AVLLGGLVGLGLLGLSGCGRAGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCG
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH
LGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGSRLLEMGSPQDLPWSVLLPVG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
LAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG
HHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCEEEEEEECC
SYGAALLGLGCLAFPSRWGAMAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLG
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
MASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYFVHAQPQAAFLLAALITALIL
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHH
AALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG
HHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHH
ILVLCLLLGQGWRLWQSRTASR
HHHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHH
AVLLGGLVGLGLLGLSGCGRAGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCG
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH
LGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGSRLLEMGSPQDLPWSVLLPVG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
LAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG
HHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCEEEEEEECC
SYGAALLGLGCLAFPSRWGAMAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLG
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
MASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYFVHAQPQAAFLLAALITALIL
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHH
AALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG
HHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHH
ILVLCLLLGQGWRLWQSRTASR
HHHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA