| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
Click here to switch to the map view.
The map label for this gene is 86606718
Identifier: 86606718
GI number: 86606718
Start: 2096672
End: 2098180
Strand: Reverse
Name: 86606718
Synonym: CYA_2078
Alternate gene names: NA
Gene position: 2098180-2096672 (Counterclockwise)
Preceding gene: 86606720
Following gene: 86606717
Centisome position: 71.54
GC content: 68.26
Gene sequence:
>1509_bases ATGGTAAGCGGAGCGCTGGCGATTGGGGCTGCAATTGGCTTGGTGGTTTTGCTGTTGGAAGCGATTCGCTATCGCCGCTG GGGATCCCTTCGCCGTTGGCAGCCGGCAGTGGGGCTGGGCTTGGCAGCCTTGGCGGCGCTGGGGGCAGGGCTGGGACAGT TGTCGGAGCCGATCCCGCTAGCGGTGTTGCTGGGGGGACTGGTGGGGTTGGGTCTGCTGGGCTTGAGCGGCTGCGGGCGG GCCGGGCAGGGGCTGGCGGTGCTGCTGCTCAGCTTGGCCAGCGTGTGGGGCCTAGCCCGCGGTGCTTTCGAGGAATCTGA GGCGGGAGCTGCTTTTTCTCTGCTGCTGTGGGGCTGCGGCCTGGGGATGGGCTTGGTGGGGATCCCGTTGCTGGGCTGCT TGGCCGAGGCGGAGATGCTGTCTGTGCTGATGGGTCTGGGCCAGGGCTGGAGCGGCATCGCCGCCTTGACCTGGGGATCC CGCCTGCTGGAGATGGGCTCCCCCCAAGATCTCCCTTGGTCGGTGCTGCTGCCGGTGGGGCTGGCTGCCCTCAGCCTGGT GGCGGGCACGCTGCCCCTGCTGATCCTCCCCGTTCCCGCCAGCGGGACGGAGTCCTCGCGCGACAGCGAGGTGGGCTCCA ACCGGCTGCTGTCGGCCCTGGGGCACGGTGTGGGATGGCTGGTGGCGACGGCGCTGGCTTTGGCCCTGGTGCGCAACGGG CTGTACCAGGATCCCTTTTGGGCGCTGCTGTACGGGGCGGGGGTGCTGCTCTCGTGGGCTCTGCTGGCTTTGGAGGGCGG GATCCCGGCACCCGAGGGGAAAGAGGCCTTGCTCTGGCGGGCCTGTGTGAGCCTGACGCTGGTAGGCGGTGGGGCGCTGC TGGCGCTGCGGCTGGGGGGATCCTACGGGGCGGCGCTGCTGGGGCTGGGGTGTCTGGCTTTTCCCAGCCGCTGGGGGGCA ATGGCCGCCCTGTTTTTGTCGGCCCAACCCCTGCTGCAAAACCTGCTGCACCAGTTCAACCTGCAGGTGGCCGGGATCGA CCTCACCCAGCCCTATGTGGCGGCGGCGCTGTACCTGGGCATGGCGAGCATGGGGCTGGCAGCGCTTGTCCACTGGGTGT ACGGGCAAGACAGGCCGCTGCCGACGGGGATCGGCCTGACGCTGGCCAGCCTGCTCCTGCCGCTGGGGGTGGGCTATTTC GTCCACGCCCAGCCGCAGGCGGCCTTCTTGCTGGCAGCCTTGATCACCGCCTTGATCTTGGCAGCGCTGCAGCCCATAGC CCTAAACCAAGAAAGGGGAAGGGCACCTTGGACAGGGACCCAAGCTTTGGGCCTGGCTATGCTTGCCATTTTGGGCTCCA ACCTCAGCCGCAACTGGACGGTGACGGGGTTCTATGCCACCCGCCTGGAGCGGGCCCTGGTGCTGGTGGTTCTCGTCGGG ATCCTGGTTCTCTGCCTCTTGCTTGGGCAGGGCTGGCGCCTGTGGCAGTCCAGGACTGCATCCCGCTAA
Upstream 100 bases:
>100_bases TTCTGTCAACCCTTTTGCCGTTTGCGCCAGCGGGACGGAGTCCTTCGATGGCCAGACCAAGATCGGCGATAGTTGAGGAA GGGTTGGTCAGGAGGGGGAG
Downstream 100 bases:
>100_bases ATGCCCACCCTCGCCTGTTGGGGCTCCCAGACCGTGAAACCTGTTCCTCTCGGCACCCGCGGCACCTGGCAAGGGATCCC CGGCCCCGAGCAAACGGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPLAVLLGGLVGLGLLGLSGCGR AGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCGLGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGS RLLEMGSPQDLPWSVLLPVGLAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGGSYGAALLGLGCLAFPSRWGA MAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLGMASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYF VHAQPQAAFLLAALITALILAALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG ILVLCLLLGQGWRLWQSRTASR
Sequences:
>Translated_502_residues MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPLAVLLGGLVGLGLLGLSGCGR AGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCGLGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGS RLLEMGSPQDLPWSVLLPVGLAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGGSYGAALLGLGCLAFPSRWGA MAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLGMASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYF VHAQPQAAFLLAALITALILAALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG ILVLCLLLGQGWRLWQSRTASR >Mature_502_residues MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPLAVLLGGLVGLGLLGLSGCGR AGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCGLGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGS RLLEMGSPQDLPWSVLLPVGLAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGGSYGAALLGLGCLAFPSRWGA MAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLGMASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYF VHAQPQAAFLLAALITALILAALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG ILVLCLLLGQGWRLWQSRTASR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51705; Mature: 51705
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHH AVLLGGLVGLGLLGLSGCGRAGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCG HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH LGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGSRLLEMGSPQDLPWSVLLPVG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH LAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG HHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCEEEEEEECC SYGAALLGLGCLAFPSRWGAMAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLG CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH MASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYFVHAQPQAAFLLAALITALIL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHH AALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG HHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHH ILVLCLLLGQGWRLWQSRTASR HHHHHHHHCCCHHHHHHCCCCC >Mature Secondary Structure MVSGALAIGAAIGLVVLLLEAIRYRRWGSLRRWQPAVGLGLAALAALGAGLGQLSEPIPL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHH AVLLGGLVGLGLLGLSGCGRAGQGLAVLLLSLASVWGLARGAFEESEAGAAFSLLLWGCG HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH LGMGLVGIPLLGCLAEAEMLSVLMGLGQGWSGIAALTWGSRLLEMGSPQDLPWSVLLPVG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH LAALSLVAGTLPLLILPVPASGTESSRDSEVGSNRLLSALGHGVGWLVATALALALVRNG HHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC LYQDPFWALLYGAGVLLSWALLALEGGIPAPEGKEALLWRACVSLTLVGGGALLALRLGG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCEEEEEEECC SYGAALLGLGCLAFPSRWGAMAALFLSAQPLLQNLLHQFNLQVAGIDLTQPYVAAALYLG CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH MASMGLAALVHWVYGQDRPLPTGIGLTLASLLLPLGVGYFVHAQPQAAFLLAALITALIL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHH AALQPIALNQERGRAPWTGTQALGLAMLAILGSNLSRNWTVTGFYATRLERALVLVVLVG HHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHH ILVLCLLLGQGWRLWQSRTASR HHHHHHHHCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA