| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606721
Identifier: 86606721
GI number: 86606721
Start: 2101216
End: 2101767
Strand: Reverse
Name: 86606721
Synonym: CYA_2081
Alternate gene names: NA
Gene position: 2101767-2101216 (Counterclockwise)
Preceding gene: 86606722
Following gene: 86606720
Centisome position: 71.67
GC content: 45.47
Gene sequence:
>552_bases GTGCAAAGGGAACGACTAGCTTATAGTCAAGAAGTCAGGAATATTCCAGCGGAGGATTTGATTGCCATCGACCAGACGGG AGTCTGGGAGGGAATGGAGCGGAGAGTATCTCGGAGTTTACGTGGTCAAAGGGCTTATCATTATCGTCAGAGATACAAGG GTGAAAAGTATACGGTTATTGGAGCTATTTCCTTGAGAGGTGTAGTTGGCTGTCGTGTCATCAAGGGTGGGATGAAGAAA GGAGATTTTTTGGAGTTTTTGAGAAGCGAGCTATGTCCGAAGCTAGATGCGAGGAAGGATTTAAATATCCACAAGAGTCG GGAAGTTGAGGAATTGATTAGGGGGACAGGAGCACGAATCCTATACCTACCTGTGTATGCGCCGGAGTTGAATCCCATTG AGATGATGTGGTCGGTGTTGAAGCATTTTATTCGGCAGCTTTGCAGAATTGGGAAATATAGCATGGAGCAGATAGTGAAG ACTTCTTTACTACTGATCAATCCATCCTCCTTCCAAAGTTGGTTTGCTAAGTGCTGCTATTGTACCCCTTGA
Upstream 100 bases:
>100_bases GAATCAATGTAAGCATCGTCACGATACATAATTTCTTGAAAAAGCAAGGAATGACTTTAAAAAAAAGACCTACCGCAGTG CAAAAGTCAAAGAAGAGGAG
Downstream 100 bases:
>100_bases GTCCTTAACAGGCTGTAAGCTCAACCACTTTACGGTCATTTCGGCTGATGGAGTTTCTCTTTCCTGACAGAAGCCAAAAC CAGTGGTACACTACCGCTAC
Product: ISSoc4, transposase orfB
Products: NA
Alternate protein names: Transposase Of Insertion Sequence; Transposase And Inactivated Derivatives-Like Protein; LOW QUALITY PROTEIN Transposase; ISSpo6 Transposase OrfB; ISSoc4 Transposase OrfAB; Transposase And Inactivated Derivative; Transposase Fragment
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVIGAISLRGVVGCRVIKGGMKK GDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARILYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVK TSLLLINPSSFQSWFAKCCYCTP
Sequences:
>Translated_183_residues MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVIGAISLRGVVGCRVIKGGMKK GDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARILYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVK TSLLLINPSSFQSWFAKCCYCTP >Mature_183_residues MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVIGAISLRGVVGCRVIKGGMKK GDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARILYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVK TSLLLINPSSFQSWFAKCCYCTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21292; Mature: 21292
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVI CCCHHHHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE GAISLRGVVGCRVIKGGMKKGDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARI EEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEE LYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVKTSLLLINPSSFQSWFAKCCY EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEECCHHHHHHHHHHCC CTP CCC >Mature Secondary Structure MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVI CCCHHHHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE GAISLRGVVGCRVIKGGMKKGDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARI EEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEE LYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVKTSLLLINPSSFQSWFAKCCY EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEECCHHHHHHHHHHCC CTP CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA