Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86606721

Identifier: 86606721

GI number: 86606721

Start: 2101216

End: 2101767

Strand: Reverse

Name: 86606721

Synonym: CYA_2081

Alternate gene names: NA

Gene position: 2101767-2101216 (Counterclockwise)

Preceding gene: 86606722

Following gene: 86606720

Centisome position: 71.67

GC content: 45.47

Gene sequence:

>552_bases
GTGCAAAGGGAACGACTAGCTTATAGTCAAGAAGTCAGGAATATTCCAGCGGAGGATTTGATTGCCATCGACCAGACGGG
AGTCTGGGAGGGAATGGAGCGGAGAGTATCTCGGAGTTTACGTGGTCAAAGGGCTTATCATTATCGTCAGAGATACAAGG
GTGAAAAGTATACGGTTATTGGAGCTATTTCCTTGAGAGGTGTAGTTGGCTGTCGTGTCATCAAGGGTGGGATGAAGAAA
GGAGATTTTTTGGAGTTTTTGAGAAGCGAGCTATGTCCGAAGCTAGATGCGAGGAAGGATTTAAATATCCACAAGAGTCG
GGAAGTTGAGGAATTGATTAGGGGGACAGGAGCACGAATCCTATACCTACCTGTGTATGCGCCGGAGTTGAATCCCATTG
AGATGATGTGGTCGGTGTTGAAGCATTTTATTCGGCAGCTTTGCAGAATTGGGAAATATAGCATGGAGCAGATAGTGAAG
ACTTCTTTACTACTGATCAATCCATCCTCCTTCCAAAGTTGGTTTGCTAAGTGCTGCTATTGTACCCCTTGA

Upstream 100 bases:

>100_bases
GAATCAATGTAAGCATCGTCACGATACATAATTTCTTGAAAAAGCAAGGAATGACTTTAAAAAAAAGACCTACCGCAGTG
CAAAAGTCAAAGAAGAGGAG

Downstream 100 bases:

>100_bases
GTCCTTAACAGGCTGTAAGCTCAACCACTTTACGGTCATTTCGGCTGATGGAGTTTCTCTTTCCTGACAGAAGCCAAAAC
CAGTGGTACACTACCGCTAC

Product: ISSoc4, transposase orfB

Products: NA

Alternate protein names: Transposase Of Insertion Sequence; Transposase And Inactivated Derivatives-Like Protein; LOW QUALITY PROTEIN Transposase; ISSpo6 Transposase OrfB; ISSoc4 Transposase OrfAB; Transposase And Inactivated Derivative; Transposase Fragment

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVIGAISLRGVVGCRVIKGGMKK
GDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARILYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVK
TSLLLINPSSFQSWFAKCCYCTP

Sequences:

>Translated_183_residues
MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVIGAISLRGVVGCRVIKGGMKK
GDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARILYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVK
TSLLLINPSSFQSWFAKCCYCTP
>Mature_183_residues
MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVIGAISLRGVVGCRVIKGGMKK
GDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARILYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVK
TSLLLINPSSFQSWFAKCCYCTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21292; Mature: 21292

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVI
CCCHHHHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GAISLRGVVGCRVIKGGMKKGDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARI
EEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEE
LYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVKTSLLLINPSSFQSWFAKCCY
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEECCHHHHHHHHHHCC
CTP
CCC
>Mature Secondary Structure
MQRERLAYSQEVRNIPAEDLIAIDQTGVWEGMERRVSRSLRGQRAYHYRQRYKGEKYTVI
CCCHHHHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GAISLRGVVGCRVIKGGMKKGDFLEFLRSELCPKLDARKDLNIHKSREVEELIRGTGARI
EEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEE
LYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVKTSLLLINPSSFQSWFAKCCY
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEECCHHHHHHHHHHCC
CTP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA