| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605220
Identifier: 86605220
GI number: 86605220
Start: 520081
End: 520668
Strand: Reverse
Name: 86605220
Synonym: CYA_0503
Alternate gene names: NA
Gene position: 520668-520081 (Counterclockwise)
Preceding gene: 86605221
Following gene: 86605219
Centisome position: 17.75
GC content: 60.71
Gene sequence:
>588_bases ATGGAGCAACCCCCCGCCAAGACCTACCTAGATTTACAGGCTGCGCGACGGGGCCAGGTGGATCTGGAAACCGACCGGGA GACTTTGGCCCGTTACCTGCGCGGCCATGGCCAGTGGATCCAGCGCTGCTTCCGGCCACTCCAGGTGGAGCCCCTCTCTG CCGAAATCTATAGGCTGCAGTTTTTCCGCATGGGCGGGCTGGGGTTTGAGCTGGAGCCCAGCTTTGGGGTGAAGATCTGG CCAGAGGAAGATTACCTGTTTCGGCTGACTTCCATTGAGCTGCCGGGGGATGCCGCCCTGCCCTACTGGGTGGATTGTCG GGCCAGCTTCCGGCTGGAAGAACTACCGGGATCCCTGGCCACCACCCGCGTCCACTGGGATCTCCAGCTGAATATCCGGC TGCATTTGCCCAAGTTTTTGCAGGTTCTGCCGCGCAAGTTGGTTCAGAAAGTGGGCAGCCAGGTGGTGCAGCAGGTTACC CGCGGCCTCAGCGATCGCTTTACCCACAATGTCTGCAGCGATTTCTATGGCTCCATTGGCCGTTCCCATCACCCCTATCG CTTGGTTGCGGTGGAAGATGGGGCGTGA
Upstream 100 bases:
>100_bases CATCAGGTGGATATTCGGGATGTCTATCGCCAGCTCCAAGCCCGCCGTTCCCCTCAGTGAAGGTGCTCTGTCCGAGGAGG GGGAGCTGCCTTTGGAGGAG
Downstream 100 bases:
>100_bases TATGGTAAGGGGCACATGTGTTGCGGGCAGGCTGCTTGGTCCTTCCCGGCAACGGGCGATGGGGTTCGCCGCAACCGCCT CAGGCAGATCCTAGGGATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 195; Mature: 195
Protein sequence:
>195_residues MEQPPAKTYLDLQAARRGQVDLETDRETLARYLRGHGQWIQRCFRPLQVEPLSAEIYRLQFFRMGGLGFELEPSFGVKIW PEEDYLFRLTSIELPGDAALPYWVDCRASFRLEELPGSLATTRVHWDLQLNIRLHLPKFLQVLPRKLVQKVGSQVVQQVT RGLSDRFTHNVCSDFYGSIGRSHHPYRLVAVEDGA
Sequences:
>Translated_195_residues MEQPPAKTYLDLQAARRGQVDLETDRETLARYLRGHGQWIQRCFRPLQVEPLSAEIYRLQFFRMGGLGFELEPSFGVKIW PEEDYLFRLTSIELPGDAALPYWVDCRASFRLEELPGSLATTRVHWDLQLNIRLHLPKFLQVLPRKLVQKVGSQVVQQVT RGLSDRFTHNVCSDFYGSIGRSHHPYRLVAVEDGA >Mature_195_residues MEQPPAKTYLDLQAARRGQVDLETDRETLARYLRGHGQWIQRCFRPLQVEPLSAEIYRLQFFRMGGLGFELEPSFGVKIW PEEDYLFRLTSIELPGDAALPYWVDCRASFRLEELPGSLATTRVHWDLQLNIRLHLPKFLQVLPRKLVQKVGSQVVQQVT RGLSDRFTHNVCSDFYGSIGRSHHPYRLVAVEDGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22538; Mature: 22538
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQPPAKTYLDLQAARRGQVDLETDRETLARYLRGHGQWIQRCFRPLQVEPLSAEIYRLQ CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHEEE FFRMGGLGFELEPSFGVKIWPEEDYLFRLTSIELPGDAALPYWVDCRASFRLEELPGSLA EEEECCCCEEECCCCCEEEECCCCEEEEEEEEECCCCCCCCEEEECCCCCCHHHCCCCEE TTRVHWDLQLNIRLHLPKFLQVLPRKLVQKVGSQVVQQVTRGLSDRFTHNVCSDFYGSIG EEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RSHHPYRLVAVEDGA CCCCCEEEEEEECCC >Mature Secondary Structure MEQPPAKTYLDLQAARRGQVDLETDRETLARYLRGHGQWIQRCFRPLQVEPLSAEIYRLQ CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHEEE FFRMGGLGFELEPSFGVKIWPEEDYLFRLTSIELPGDAALPYWVDCRASFRLEELPGSLA EEEECCCCEEECCCCCEEEECCCCEEEEEEEEECCCCCCCCEEEECCCCCCHHHCCCCEE TTRVHWDLQLNIRLHLPKFLQVLPRKLVQKVGSQVVQQVTRGLSDRFTHNVCSDFYGSIG EEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RSHHPYRLVAVEDGA CCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA