| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605219
Identifier: 86605219
GI number: 86605219
Start: 518175
End: 519785
Strand: Reverse
Name: 86605219
Synonym: CYA_0502
Alternate gene names: NA
Gene position: 519785-518175 (Counterclockwise)
Preceding gene: 86605220
Following gene: 86605217
Centisome position: 17.72
GC content: 64.49
Gene sequence:
>1611_bases ATGGGCTTTTTTGTCGGCCAGATCCTGGGCCGGCTGGGAATGCCGCCGCTAGTGGGGATGATCCTGGTCGGGATCCTGTT GCAAGAGGTCTTGTCCCCAGAGCTGTTGGCGGCAGCCGGGGATCTGCGCTTGGTGGCCGTCACGATTATCCTGATGAAGG CCGGGCTGGGGCTGGATCGGGAAAAGCTGGCCCAGCAGGGATCCGTGGCGCTGCGGCTGGGGTTTTTGCCGGCAGCCTGT GAGGCGCTGGCGGTGGCGCTCTTGAGCCGCTGGATCCTGGGGTTGGACTGGGCGACGGGGCTGCTTTTGGGCTGTGTAAT CGGGGCGGAGTCGCCGGCGGTGATCGTGCCGGGGATGTTGCGCCTCAAGAGCTTGGGCTGGGGGGTGGCCAAAGGGATCC CGGACGCCATTTTGACCGGCAGCGCCCTTTCCGACGTGCTGCTGCTGTTGGGCTTTAGCCTGTTGCTGAGCTTTTTGGGG CAGGGATCTCCAGAGGGCCTTCGCCTGTTCGGCCTGGAGCTGTCGCCGCTGCAGTGGCTGCCGTTCCAGGTGGGGATGGA GATCCTGCTGGGGGTGGTCATCGGCTACCTGGGGGCGCGGCTTTTGGTGGCGCTCCTGGTGCAGCAGAACTGGACGCGCA ACAGCACGCAAGAGGTGTTGCTGGCAGCCTGCCTGGCGCTGGGCCTGGTGTTGGCGTCGCAGGTGTGGCCCTATTTTTCC GGCTACCCGGCGGTGATGGCCCTGGGGTTTTTTCTCGTCCAACTGGATGGGCCGCTGGCGCGGCGGCTGCGGCTTGGGTT CGACGCCCTCTGGACGGTGGCGGAGATCGTGCTGTTTGTCCTGCTGGGGGCCTCTTTGGATCTGCAGGTACTGGGATCCC TGCTCTTGCCCGGCTTGCTGCTTTTGACCCTGAGCCTGCTGTTGGGCCGGGGCCTGGGCTGGTGGCTTTCCACGGTAGGG AGCAACTGGAACTGGCGGGAGCGGCTCTTTTTGCTGCCGGGCAACATGGCCAAGGCCACGGTGCAGGCGGCCATCGGCGG CATCCCCTTGGCCCAAGGGATCCCTGGCGGAGAGACCATCCTGGCCATAGCGGCCTTGTCGATTCTGGCCACAGCACCCC TAGGGGCTTGGCTGACCCAGGTCTTTGCCCCTCGCCTGCTGGAAAAAGGGGAGGTGGATCCCACCAAGGTGGGCAGCCAG GGCAAGGTGAGCTTCTTGGCAGCCGTCGATACTTCTCCCTTGGCCGAGGCAGTGCTGCGCAAGGCAGCGGATCTGGCGCG GCGGCTGGACGGGGAAGTGATTGTGCTCCATGTTACCGACGAGCCGCAGGGGAAGAGAGTAGAACAGTTGCGGCAGCTGG CCCAGCGCCTCTTGGCCGACATTCGCCACGAATTTTGCCTGGCCTCCGGGCCTTTGGCAGAGACCATCGTGGGCCTAGCC CAGGAGCGTCAGGTTACCGATATAGTCATGGGCAAGCGGGGCCAGCGGGGCTGGGAGCAAGTATTGCTGGGATCCACTTC GCAAGCGGTGTTGGAGACCAGCCCCATCCCGGTGATTTTGGTGGAAGAAGAGGAGTTCGGGAAAGCCAGAATTGACACTC CCACCGCCTAA
Upstream 100 bases:
>100_bases GAAACGCGAACGGCTTTTTCTCCCTGGGCTGCCCTTCAACACGCGGACGGCGAGGAGAGAGGTTTTGTTGATGCTGGGCA GTTGGCTGTGGATCTTGGGG
Downstream 100 bases:
>100_bases AGGCGGGGGATTCTTACGCAGTCCACAAAAGAACCCGTAACGGCGTTGTCAAAGCGCCTCTAGACAGTTCCTTCACGCAA AGCCCCAAGGTTCTGCTGAC
Product: transporter, monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein
Products: NA
Alternate protein names: Na(+)/H(+) Antiporter; Transporter CPA2 Family; Sodium/Proton Antiporter CPA1 Family; Na+/H+-Exchanging Protein; Na+/H+ Antiporter; Sodium/Hydrogen Antiporter; Sodium/Hydrogen Exchanger Family Protein; Transporter Monovalent CationProton Antiporter-2 Family; Na+/H+-Exchanging ProteinNa+/H+ Antiporter; Sodium/Hydrogen Exchanger/Universal Stress Family Protein; Monovalent CationProton Antiporter-2 Family Protein
Number of amino acids: Translated: 536; Mature: 535
Protein sequence:
>536_residues MGFFVGQILGRLGMPPLVGMILVGILLQEVLSPELLAAAGDLRLVAVTIILMKAGLGLDREKLAQQGSVALRLGFLPAAC EALAVALLSRWILGLDWATGLLLGCVIGAESPAVIVPGMLRLKSLGWGVAKGIPDAILTGSALSDVLLLLGFSLLLSFLG QGSPEGLRLFGLELSPLQWLPFQVGMEILLGVVIGYLGARLLVALLVQQNWTRNSTQEVLLAACLALGLVLASQVWPYFS GYPAVMALGFFLVQLDGPLARRLRLGFDALWTVAEIVLFVLLGASLDLQVLGSLLLPGLLLLTLSLLLGRGLGWWLSTVG SNWNWRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGETILAIAALSILATAPLGAWLTQVFAPRLLEKGEVDPTKVGSQ GKVSFLAAVDTSPLAEAVLRKAADLARRLDGEVIVLHVTDEPQGKRVEQLRQLAQRLLADIRHEFCLASGPLAETIVGLA QERQVTDIVMGKRGQRGWEQVLLGSTSQAVLETSPIPVILVEEEEFGKARIDTPTA
Sequences:
>Translated_536_residues MGFFVGQILGRLGMPPLVGMILVGILLQEVLSPELLAAAGDLRLVAVTIILMKAGLGLDREKLAQQGSVALRLGFLPAAC EALAVALLSRWILGLDWATGLLLGCVIGAESPAVIVPGMLRLKSLGWGVAKGIPDAILTGSALSDVLLLLGFSLLLSFLG QGSPEGLRLFGLELSPLQWLPFQVGMEILLGVVIGYLGARLLVALLVQQNWTRNSTQEVLLAACLALGLVLASQVWPYFS GYPAVMALGFFLVQLDGPLARRLRLGFDALWTVAEIVLFVLLGASLDLQVLGSLLLPGLLLLTLSLLLGRGLGWWLSTVG SNWNWRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGETILAIAALSILATAPLGAWLTQVFAPRLLEKGEVDPTKVGSQ GKVSFLAAVDTSPLAEAVLRKAADLARRLDGEVIVLHVTDEPQGKRVEQLRQLAQRLLADIRHEFCLASGPLAETIVGLA QERQVTDIVMGKRGQRGWEQVLLGSTSQAVLETSPIPVILVEEEEFGKARIDTPTA >Mature_535_residues GFFVGQILGRLGMPPLVGMILVGILLQEVLSPELLAAAGDLRLVAVTIILMKAGLGLDREKLAQQGSVALRLGFLPAACE ALAVALLSRWILGLDWATGLLLGCVIGAESPAVIVPGMLRLKSLGWGVAKGIPDAILTGSALSDVLLLLGFSLLLSFLGQ GSPEGLRLFGLELSPLQWLPFQVGMEILLGVVIGYLGARLLVALLVQQNWTRNSTQEVLLAACLALGLVLASQVWPYFSG YPAVMALGFFLVQLDGPLARRLRLGFDALWTVAEIVLFVLLGASLDLQVLGSLLLPGLLLLTLSLLLGRGLGWWLSTVGS NWNWRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGETILAIAALSILATAPLGAWLTQVFAPRLLEKGEVDPTKVGSQG KVSFLAAVDTSPLAEAVLRKAADLARRLDGEVIVLHVTDEPQGKRVEQLRQLAQRLLADIRHEFCLASGPLAETIVGLAQ ERQVTDIVMGKRGQRGWEQVLLGSTSQAVLETSPIPVILVEEEEFGKARIDTPTA
Specific function: Unknown
COG id: COG0025
COG function: function code P; NhaP-type Na+/H+ and K+/H+ antiporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI47271479, Length=384, Percent_Identity=31.5104166666667, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI66793392, Length=368, Percent_Identity=30.4347826086957, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI154937338, Length=303, Percent_Identity=30.3630363036304, Blast_Score=110, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17567635, Length=414, Percent_Identity=22.463768115942, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI32566724, Length=170, Percent_Identity=25.8823529411765, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI45550940, Length=419, Percent_Identity=28.8782816229117, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI20129297, Length=417, Percent_Identity=29.0167865707434, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI24649169, Length=432, Percent_Identity=29.6296296296296, Blast_Score=99, Evalue=6e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56933; Mature: 56802
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFFVGQILGRLGMPPLVGMILVGILLQEVLSPELLAAAGDLRLVAVTIILMKAGLGLDR CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHCCCCCH EKLAQQGSVALRLGFLPAACEALAVALLSRWILGLDWATGLLLGCVIGAESPAVIVPGML HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHH RLKSLGWGVAKGIPDAILTGSALSDVLLLLGFSLLLSFLGQGSPEGLRLFGLELSPLQWL HHHHCCCHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHC PFQVGMEILLGVVIGYLGARLLVALLVQQNWTRNSTQEVLLAACLALGLVLASQVWPYFS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHC GYPAVMALGFFLVQLDGPLARRLRLGFDALWTVAEIVLFVLLGASLDLQVLGSLLLPGLL CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LLTLSLLLGRGLGWWLSTVGSNWNWRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGETI HHHHHHHHHCCHHHHHHHHCCCCCHHHEEEECCCCHHHHHHHHHHCCCCHHCCCCCCHHH LAIAALSILATAPLGAWLTQVFAPRLLEKGEVDPTKVGSQGKVSFLAAVDTSPLAEAVLR HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHH KAADLARRLDGEVIVLHVTDEPQGKRVEQLRQLAQRLLADIRHEFCLASGPLAETIVGLA HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH QERQVTDIVMGKRGQRGWEQVLLGSTSQAVLETSPIPVILVEEEEFGKARIDTPTA HHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCC >Mature Secondary Structure GFFVGQILGRLGMPPLVGMILVGILLQEVLSPELLAAAGDLRLVAVTIILMKAGLGLDR CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHCCCCCH EKLAQQGSVALRLGFLPAACEALAVALLSRWILGLDWATGLLLGCVIGAESPAVIVPGML HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHH RLKSLGWGVAKGIPDAILTGSALSDVLLLLGFSLLLSFLGQGSPEGLRLFGLELSPLQWL HHHHCCCHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHC PFQVGMEILLGVVIGYLGARLLVALLVQQNWTRNSTQEVLLAACLALGLVLASQVWPYFS CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHC GYPAVMALGFFLVQLDGPLARRLRLGFDALWTVAEIVLFVLLGASLDLQVLGSLLLPGLL CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LLTLSLLLGRGLGWWLSTVGSNWNWRERLFLLPGNMAKATVQAAIGGIPLAQGIPGGETI HHHHHHHHHCCHHHHHHHHCCCCCHHHEEEECCCCHHHHHHHHHHCCCCHHCCCCCCHHH LAIAALSILATAPLGAWLTQVFAPRLLEKGEVDPTKVGSQGKVSFLAAVDTSPLAEAVLR HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHH KAADLARRLDGEVIVLHVTDEPQGKRVEQLRQLAQRLLADIRHEFCLASGPLAETIVGLA HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH QERQVTDIVMGKRGQRGWEQVLLGSTSQAVLETSPIPVILVEEEEFGKARIDTPTA HHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA