| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is yjjN [C]
Identifier: 83311243
GI number: 83311243
Start: 2320501
End: 2321631
Strand: Reverse
Name: yjjN [C]
Synonym: amb2144
Alternate gene names: 83311243
Gene position: 2321631-2320501 (Counterclockwise)
Preceding gene: 83311248
Following gene: 83311242
Centisome position: 46.74
GC content: 66.93
Gene sequence:
>1131_bases ATGGCGCGACGGTGCCGCGGGTCGGAGATAACGGGAAGAGAGAGGGAATACGGAATGAGCATTTCCGCTTATCGTTGGAT GATGACCGGTGTCGGCCAGCCCATGGTGAAGGAAGCCATGGAAATCGCCGCGCCGGGCGCCGGTGAGGTGCTGGTCGAGG TCGCGGGCTGCGGCGTCTGCCACACGGATCTGGACTACTATTACAACGGCGTGCGCACCAACCACGCCCTGCCCCTGGCG CTTGGCCACGAGATCAGCGGCCGGGTGATTCAGGCCGGCGCCGGCGCCGAAAGCTGGGTCGGCAAGGCCGTCATCATTTC GGCGGTGATTCCCTGCGGCCAGTGCGACCTGTGCAAGCGCGGCAAGGGCACCATCTGCCGCTCGCAGAAGATGCCGGGCA ACGATCTGCAGGGCGGCTTCGCCACCCATATCACCGTCCCCGCCAACGGGCTGTGCGCCGTGGACGAGGCCCGGCTGAAG GCTGCCGGCCTGGAGCTGTCCGAGGTCTCCGTGGTGGCCGACGCGCTGACCACCCCCTATCAGGCCGCCGTGCAGGCCGG CATCGGCCAGGGCGACCTGGTGATCGTCATCGGCTGTGGCGGCGTGGGCGGCTATTCCGTCCAGGTGGCCTCGGCCATGG GCGCCACCGTGGTGGCTCTGGACATCGACCCGGTCAAGCTGGAAGCGGTCAAGGCGGCGGGCGCCAAGCTGACGCTGAAC CCCAAGGACTTCCCCTCGACCCGCGAGATCAAGAAGGAAATCGGCGCCTTCGCCAAGGCCCAGGGCCTGCGCTCCACCGA GTGGATCATCATGGAATGCTCGGGCAGCGTTCCCGGCCAGCAGAGCGCCTTCGACCTGATGGTCCATGGCTGCACCATCT GCGTGGTGGGCTACACCATGAACAAGGCCGAGTTCCGCCTGTCCAACCTGATGGCCTTCCATGCCCGCGCGCTGGGCAAT TGGGGCTGCCCGCCGGACCTGTATCCCGGCGCCCTGGATCTGGTCCTGTCGGGCAAGATCAACGTGAAGAACTTCGTCGA GCGTCGCCCGCTGGACAGCATCAACGACACGTTCGCCGCCGTGCACGACCACAAGCTGTCGCGCCGCGCCGTCCTGTGCC CCAACGCCTAA
Upstream 100 bases:
>100_bases TGCATACCACCCATTTGGGTCGGACGACAAGCCCACAAGCTGCACTTGACGGCTAATTCGGTATTGTGGTACGCATTTAC GGAATAATACAGGGCGATCC
Downstream 100 bases:
>100_bases AAGAAATTCAAGAGAGGGAGAGTCCTGGTCATGAAGAAGGAAACCGCGGCCATCGTCGATTCAACGGCGCCCGCCCACCT CAACGATCACAATCTGGTCC
Product: Zn-dependent alcohol dehydrogenase
Products: NA
Alternate protein names: ADH-HT [H]
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MARRCRGSEITGREREYGMSISAYRWMMTGVGQPMVKEAMEIAAPGAGEVLVEVAGCGVCHTDLDYYYNGVRTNHALPLA LGHEISGRVIQAGAGAESWVGKAVIISAVIPCGQCDLCKRGKGTICRSQKMPGNDLQGGFATHITVPANGLCAVDEARLK AAGLELSEVSVVADALTTPYQAAVQAGIGQGDLVIVIGCGGVGGYSVQVASAMGATVVALDIDPVKLEAVKAAGAKLTLN PKDFPSTREIKKEIGAFAKAQGLRSTEWIIMECSGSVPGQQSAFDLMVHGCTICVVGYTMNKAEFRLSNLMAFHARALGN WGCPPDLYPGALDLVLSGKINVKNFVERRPLDSINDTFAAVHDHKLSRRAVLCPNA
Sequences:
>Translated_376_residues MARRCRGSEITGREREYGMSISAYRWMMTGVGQPMVKEAMEIAAPGAGEVLVEVAGCGVCHTDLDYYYNGVRTNHALPLA LGHEISGRVIQAGAGAESWVGKAVIISAVIPCGQCDLCKRGKGTICRSQKMPGNDLQGGFATHITVPANGLCAVDEARLK AAGLELSEVSVVADALTTPYQAAVQAGIGQGDLVIVIGCGGVGGYSVQVASAMGATVVALDIDPVKLEAVKAAGAKLTLN PKDFPSTREIKKEIGAFAKAQGLRSTEWIIMECSGSVPGQQSAFDLMVHGCTICVVGYTMNKAEFRLSNLMAFHARALGN WGCPPDLYPGALDLVLSGKINVKNFVERRPLDSINDTFAAVHDHKLSRRAVLCPNA >Mature_375_residues ARRCRGSEITGREREYGMSISAYRWMMTGVGQPMVKEAMEIAAPGAGEVLVEVAGCGVCHTDLDYYYNGVRTNHALPLAL GHEISGRVIQAGAGAESWVGKAVIISAVIPCGQCDLCKRGKGTICRSQKMPGNDLQGGFATHITVPANGLCAVDEARLKA AGLELSEVSVVADALTTPYQAAVQAGIGQGDLVIVIGCGGVGGYSVQVASAMGATVVALDIDPVKLEAVKAAGAKLTLNP KDFPSTREIKKEIGAFAKAQGLRSTEWIIMECSGSVPGQQSAFDLMVHGCTICVVGYTMNKAEFRLSNLMAFHARALGNW GCPPDLYPGALDLVLSGKINVKNFVERRPLDSINDTFAAVHDHKLSRRAVLCPNA
Specific function: Thermophilic NAD(+)-dependent alcohol dehydrogenase. Bears mainly an ethanol-dehydrogenase activity [H]
COG id: COG1062
COG function: function code C; Zn-dependent alcohol dehydrogenases, class III
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the zinc-containing alcohol dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI71565154, Length=365, Percent_Identity=27.1232876712329, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI34577061, Length=249, Percent_Identity=29.718875502008, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI4501929, Length=247, Percent_Identity=29.5546558704453, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI4501933, Length=258, Percent_Identity=27.906976744186, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI262073058, Length=239, Percent_Identity=27.6150627615063, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI71743840, Length=239, Percent_Identity=27.6150627615063, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI156523966, Length=231, Percent_Identity=26.4069264069264, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI4501939, Length=231, Percent_Identity=26.4069264069264, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI226510992, Length=326, Percent_Identity=25.7668711656442, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1786552, Length=368, Percent_Identity=27.445652173913, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787863, Length=334, Percent_Identity=27.2455089820359, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1788075, Length=353, Percent_Identity=25.4957507082153, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788407, Length=215, Percent_Identity=30.6976744186047, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790718, Length=201, Percent_Identity=30.3482587064677, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87082125, Length=292, Percent_Identity=24.6575342465753, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI87081918, Length=329, Percent_Identity=27.6595744680851, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1788073, Length=327, Percent_Identity=23.8532110091743, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1790045, Length=259, Percent_Identity=24.3243243243243, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786518, Length=230, Percent_Identity=32.6086956521739, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87082401, Length=328, Percent_Identity=25.3048780487805, Blast_Score=68, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17562876, Length=348, Percent_Identity=25.8620689655172, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25146526, Length=373, Percent_Identity=26.8096514745308, Blast_Score=92, Evalue=6e-19, Organism=Caenorhabditis elegans, GI71997431, Length=375, Percent_Identity=26.6666666666667, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562878, Length=276, Percent_Identity=26.8115942028986, Blast_Score=78, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17562582, Length=191, Percent_Identity=28.2722513089005, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71988145, Length=346, Percent_Identity=24.5664739884393, Blast_Score=75, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6322619, Length=305, Percent_Identity=27.8688524590164, Blast_Score=87, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6323729, Length=218, Percent_Identity=30.2752293577982, Blast_Score=87, Evalue=6e-18, Organism=Saccharomyces cerevisiae, GI6319955, Length=305, Percent_Identity=27.8688524590164, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6320033, Length=365, Percent_Identity=26.3013698630137, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323099, Length=334, Percent_Identity=26.9461077844311, Blast_Score=83, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6319258, Length=363, Percent_Identity=24.7933884297521, Blast_Score=77, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6323961, Length=214, Percent_Identity=29.9065420560748, Blast_Score=77, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6324486, Length=224, Percent_Identity=30.3571428571429, Blast_Score=77, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6319621, Length=222, Percent_Identity=29.7297297297297, Blast_Score=76, Evalue=9e-15, Organism=Drosophila melanogaster, GI17737895, Length=370, Percent_Identity=26.7567567567568, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI17737897, Length=302, Percent_Identity=27.8145695364238, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI17137530, Length=318, Percent_Identity=27.0440251572327, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI45550770, Length=332, Percent_Identity=25.6024096385542, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI45551930, Length=332, Percent_Identity=25.6024096385542, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221457811, Length=332, Percent_Identity=25.6024096385542, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013149 - InterPro: IPR013154 - InterPro: IPR002085 - InterPro: IPR002328 - InterPro: IPR011032 - InterPro: IPR016040 [H]
Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]
EC number: =1.1.1.1 [H]
Molecular weight: Translated: 39636; Mature: 39505
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS00059 ADH_ZINC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRCRGSEITGREREYGMSISAYRWMMTGVGQPMVKEAMEIAAPGAGEVLVEVAGCGVC CCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCEE HTDLDYYYNGVRTNHALPLALGHEISGRVIQAGAGAESWVGKAVIISAVIPCGQCDLCKR ECCHHHHHCCEECCCEEEEEECCCCCCEEEEECCCHHHHHHHHEEEEHHCCCCCCCHHHC GKGTICRSQKMPGNDLQGGFATHITVPANGLCAVDEARLKAAGLELSEVSVVADALTTPY CCCCEEECCCCCCCCCCCCEEEEEEECCCCEEECHHHHHHHCCCCHHHHHHHHHHHCCCH QAAVQAGIGQGDLVIVIGCGGVGGYSVQVASAMGATVVALDIDPVKLEAVKAAGAKLTLN HHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEC PKDFPSTREIKKEIGAFAKAQGLRSTEWIIMECSGSVPGQQSAFDLMVHGCTICVVGYTM CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEEEEC NKAEFRLSNLMAFHARALGNWGCPPDLYPGALDLVLSGKINVKNFVERRPLDSINDTFAA CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHH VHDHKLSRRAVLCPNA HHHCCCCCCEEECCCC >Mature Secondary Structure ARRCRGSEITGREREYGMSISAYRWMMTGVGQPMVKEAMEIAAPGAGEVLVEVAGCGVC CCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCEE HTDLDYYYNGVRTNHALPLALGHEISGRVIQAGAGAESWVGKAVIISAVIPCGQCDLCKR ECCHHHHHCCEECCCEEEEEECCCCCCEEEEECCCHHHHHHHHEEEEHHCCCCCCCHHHC GKGTICRSQKMPGNDLQGGFATHITVPANGLCAVDEARLKAAGLELSEVSVVADALTTPY CCCCEEECCCCCCCCCCCCEEEEEEECCCCEEECHHHHHHHCCCCHHHHHHHHHHHCCCH QAAVQAGIGQGDLVIVIGCGGVGGYSVQVASAMGATVVALDIDPVKLEAVKAAGAKLTLN HHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEC PKDFPSTREIKKEIGAFAKAQGLRSTEWIIMECSGSVPGQQSAFDLMVHGCTICVVGYTM CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEEEEC NKAEFRLSNLMAFHARALGNWGCPPDLYPGALDLVLSGKINVKNFVERRPLDSINDTFAA CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHH VHDHKLSRRAVLCPNA HHHCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8020473 [H]