Definition Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome.
Accession NC_007519
Length 3,730,232

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The map label for this gene is yfbI [C]

Identifier: 78358162

GI number: 78358162

Start: 3112765

End: 3114360

Strand: Direct

Name: yfbI [C]

Synonym: Dde_3122

Alternate gene names: 78358162

Gene position: 3112765-3114360 (Clockwise)

Preceding gene: 78358161

Following gene: 78358163

Centisome position: 83.45

GC content: 60.34

Gene sequence:

>1596_bases
TTGCAGAAAAGCCCCGTATGGGAGCGCCGCCCGTGGCTGTGCGCTGCCGCCATCATATCTTTCACAACGCTGGTACGCTT
CTGGTTCATCGCCTCCGGCCAGCTTGACCTCGTGCAGGACGAGGCCCAGTACTGGGACTGGACCCGCAGACTCCAGCTTT
CCTACTATTCCAAAGGGCCGCTCATCGCGTGGCTCATCAGCATCTGGACCGGTGTTTTCGGCGATACGGAACTGGGCGTG
CGCTTTGCCGCCGTGCTCAATTCGTGCCTTGCACAGATACTGCTGTACGCCGGAACCGCACGGCTCATGCGCCGTCCGGT
ACTGGGTCTGTGGACACTGGTTGTGGCCAATACCACCCCGCTGTTCATCGCCTCCGGCATTCTGATGACCACTGACAGCC
CGCTGCTGGTCTGCTGGACGGGTGCGCTCATGTGCCTGTACTGGATGTCCGTATCATCACGCTCGCCATGGCCTTATGTG
CTGCTGGCCCTTTCCATGGCCGCCGGAGTGCTGGCCAAATATATGATGCTGGCCATGCCCGCCGTGGCCCTGCTGTACGC
GCTGGGACTCAGACGCCAGCGGCTGCTGCCAGAAGGCATGGTGCCGCGGCTGCTGGCTGCCGTCTGTGCCGGTACGGCCG
TGGGTATGCTGCCCATCCTCATATGGAATTTCCAGAACGACTTTGTGGGATTCCGCCATGTGGCCGGTCTGGCCGGTGTG
GCTTCGGCCAGCCCCGAACCGCTCATCCGCTTTGACCGCTTTCCGGAATATATCGCCTCGCAGGTCGGCATCATCAGTCC
GTGGTGGTTTGTGTTCATGCTGGTGGGCGCATGGCGCGCCCTGCGTGTGTGGCGTACGCCGCGCGCCGGACGCGACATGT
ACAGCGGACTGCGCAATGACATGAACGAAGTCCGTCAGTCACTGCTGCTGTCCGCCGCGTTCTGGCCGCTGTGGCTTTTC
TTCATAATCTGGAGCTTTCACACCCGCATCTATCCCAACTGGTCGGCCATGAGCTATGTGGCCGGCATCATGCTGTGTGC
TTCCGCGCTTGAGCGCAGTGGACAGGCTGTGCGCGAAACAGGCAGGCATCTTTCGCGGCTGCGCATGCGGCGCATCTGGG
TTGCCATGGGTGTACTTGTTTTTGTGCTGCTGTACGGGCAGAACTGGCTGCCTCTGCCGCCTGCGTACAACCCGGCGGTA
CGGCTGAAAGGCTGGAGCGACCTGAGCGGCAAACTGGAGGAACTGCAGAACAGTCTGCCCCGCCCGGACAAAGTGTTCTA
TTTTTCCAAATCATATGACATCACGGCGGCCCTTGCCTTTTACGCACCCGGACAGCCGTTCACTTATTGTGCAGACTTCG
GCAGGCGCATGAGTCAGTACGACCTGTGGCCCACTCCTGAAGACAAAAAAGGGTGGGACGCCATTTATGTGCAGAAAGAC
AACGGCATAAAACCACAGCTGAAAAGCATGTTTGAGTCATACAGGGTGCTGCGCTACCGCACCACGCACAAAGGCGCCCC
CGGGCGCGAATTCACCATTGTGGTGCTGCGCGGCTTCAAAGGCACATGGCCGCGCGAACAACAGGAGCGTTACTGA

Upstream 100 bases:

>100_bases
TCTGTGCAGTACCGGACAGGCAGGCTCTGCCCCGCTTACTGGACAGGAGCAGGGCTAGCCGCTAGACTCCGCGCCAAACG
ACTCCCCAAAGGTGAAACTC

Downstream 100 bases:

>100_bases
TGGCCAGAAGCCGTGATGCACATATATGCGCCCGCTGTGCCGCACATTCCGGCACCTGCTGCCGGATGCAGCCCGGCAAT
GAAGAGCTGTGCTTTCCGCT

Product: dolichyl-phosphate-mannose-protein mannosyltransferase family protein

Products: NA

Alternate protein names: Glycosyl Transferase Family Protein; Dolichyl-Phosphate-Mannose-Protein Mannosyltransferase; 4-Amino-4-Deoxy-L-Arabinose Transferase; Glycosyl Transferase; Dolichyl-Phosphate Beta-D-Mannosyltransferase; Glycosyltransferase Family; Undecaprenyl-PhosphomannoseProtein Mannosyltransferase; Dolichol Monophosphate Mannose Synthase; Glycosyltransferase; Family; Glycosyltransferase Protein; Transmembrane Protein; Glycosyl/Arabinosyl/Mannosyl Transferase; Dolichyl-Phosphate Mannosyltransferase

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGPLIAWLISIWTGVFGDTELGV
RFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTPLFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYV
LLALSMAAGVLAKYMMLAMPAVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV
ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRNDMNEVRQSLLLSAAFWPLWLF
FIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRETGRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAV
RLKGWSDLSGKLEELQNSLPRPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD
NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY

Sequences:

>Translated_531_residues
MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGPLIAWLISIWTGVFGDTELGV
RFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTPLFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYV
LLALSMAAGVLAKYMMLAMPAVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV
ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRNDMNEVRQSLLLSAAFWPLWLF
FIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRETGRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAV
RLKGWSDLSGKLEELQNSLPRPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD
NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY
>Mature_531_residues
MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGPLIAWLISIWTGVFGDTELGV
RFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTPLFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYV
LLALSMAAGVLAKYMMLAMPAVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV
ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRNDMNEVRQSLLLSAAFWPLWLF
FIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRETGRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAV
RLKGWSDLSGKLEELQNSLPRPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD
NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60682; Mature: 60682

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEECCCC
LIAWLISIWTGVFGDTELGVRFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCH
LFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYVLLALSMAAGVLAKYMMLAMP
HHHHCCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRND
CCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
MNEVRQSLLLSAAFWPLWLFFIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
GRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAVRLKGWSDLSGKLEELQNSLP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCC
RPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD
CCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY
CCCCHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCCHHHCCC
>Mature Secondary Structure
MQKSPVWERRPWLCAAAIISFTTLVRFWFIASGQLDLVQDEAQYWDWTRRLQLSYYSKGP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEECCCC
LIAWLISIWTGVFGDTELGVRFAAVLNSCLAQILLYAGTARLMRRPVLGLWTLVVANTTP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCH
LFIASGILMTTDSPLLVCWTGALMCLYWMSVSSRSPWPYVLLALSMAAGVLAKYMMLAMP
HHHHCCEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AVALLYALGLRRQRLLPEGMVPRLLAAVCAGTAVGMLPILIWNFQNDFVGFRHVAGLAGV
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ASASPEPLIRFDRFPEYIASQVGIISPWWFVFMLVGAWRALRVWRTPRAGRDMYSGLRND
CCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
MNEVRQSLLLSAAFWPLWLFFIIWSFHTRIYPNWSAMSYVAGIMLCASALERSGQAVRET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
GRHLSRLRMRRIWVAMGVLVFVLLYGQNWLPLPPAYNPAVRLKGWSDLSGKLEELQNSLP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCC
RPDKVFYFSKSYDITAALAFYAPGQPFTYCADFGRRMSQYDLWPTPEDKKGWDAIYVQKD
CCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
NGIKPQLKSMFESYRVLRYRTTHKGAPGREFTIVVLRGFKGTWPREQQERY
CCCCHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA