| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is glgP [H]
Identifier: 78358128
GI number: 78358128
Start: 3076705
End: 3079176
Strand: Reverse
Name: glgP [H]
Synonym: Dde_3088
Alternate gene names: 78358128
Gene position: 3079176-3076705 (Counterclockwise)
Preceding gene: 78358129
Following gene: 78358114
Centisome position: 82.55
GC content: 55.18
Gene sequence:
>2472_bases ATGTCCCGAGTCTGCAAGATGAGCAAGAACGTCAGGGAAGTCTTCAGGCTTGATGAACTGAAAGACGATATCAGGCGCAA CATGGTGGCGCTGCTGGGCAACGATCCGCGCAGCAAGCGCAAGTTTTCGTATTACAACGCGCTGGCGTACAGCGTGCGCG AGCGTCTGGTCGACCTGTGGATGCGGACCCAGAGCGATTATTACGATTCCATGGCCAAGCGGGTGTATTATCTTTCCATG GAATTTCTGCCCGGCCGCTTTCTGATGAACTACCTTACCAACATGGGCATAGTGGATGAGTGCCGCGAGATTGTGGCCGA GCTGGGTTTTTCGCTGGAAGAGCTGGAAGAGGAGGAATGGGATGCCGGTCTGGGCAACGGCGGGCTGGGGCGTCTTGCCT CGTGTTATCTCGATTCCATGGTCAGCCAGAATATTCCGGGATACGGGTACGGTATTTTGTATGACTACGGCATATTCTAT CAGTCCATCGTGAACGGCAATCAGGAAGAGCGCTGCGACAACTGGCGCAGACACGGATGCCCGTGGGAGATAACCCGCCT TGACACACTGTACGAGGTGAAGTTCTACGGCCGGTCCGAAACTTACTACGACTCTGACGGCAATGTGCGTTTCCGCTGGG TGGATACGGAAAATGTCATGGCCATGCCGTGCGACATTCTCATTCCCGGATACGGTTGCTCGCATGTTTCCAACATGCGG CTGTGGACTGCGCAGTCCAGCCGCGAATTCAACCTGTCTGATTTTAACCGCGGCGATTATATAGGGGCCATGCACGGCAA GGTGATGAGCGAAAACATCACCAAGGTGCTGTATCCCAACGATCAGTTTCTGCAGGGAATGGAACTGCGGCTCAAACAGC AGTATTTTCTGGTTTCCGCCACGTTTCAGGATATCCTGCGCCGTTATCTGAAGCAGCATACATCGCTTGCCGCACTGCCG GAGGCGGTTGCGGTGCAGCTTAACGACACACACCCCGCCATAGCCATACCCGAACTTATGCGTCTGCTTATGGACGTGTA CGGCATGGGCTGGGATGTGGCGTGGGATATCTGCACCCGCACCTTTGCCTATACCAACCACACCGTGCTGCCCGAAGCGC TGGAAACATGGCCTGTGGACCTGCTGGGCAGGCTGCTGCCGCGGCATATGCAGATAATATATGAAATAAACAGACGTTTT CTGGAAGGTGTGGCCGCAACATTTCCCGGTGATACCGAGCGCCTTTCACGCATGTCTGTCATTCAGGAAGAAGGAGGCCA GCGGGTGCGCATGGCCAACCTTGCCATTGTGGGCAGCCATACGGTGAACGGCGTGGCGGCGCTGCACAGCAATATACTGC AGACCGGTCTGTTCCGTGATTTTCATGAATATTATCCGCGCAAGATACGCAACGTGACCAACGGCGTCACGCCGCGGCGG TGGCTTATGCAGTGCAATCCTGCTCTTTCGCGGCTGATAACCCAGAGCATAGGGCCGGAATGGTGCTGCAATCTTGAAAA ACTGCGCGAACTTGTACCTCTGGCGGAAGACAGTGCATTCCGCGATGCATGGGCAAGAGCCAAGCTGGAAAACAAAAGAC TGCTGTCGCGTTATGTGCTGCGCAAAGTGCAGATGGGCATCAATCCCAACACGTTGTTTGATATGCAGTTTAAACGCATG CACGAATACAAGCGGCAGCTGCTCAACGTGATGCACGTCATCTCGCTGTTCAACCGCATCAAGGATAACCCCTCGGCGGA CATCACACCGCGCACGGTGCTTTTCGGCGGCAAGGCAGCCCCCGGATATTATCAGGCCAAGCTTATCATCAGGCTGATCA ACGAAGTTGCCCGCGTGGTCAACGCCGATGCGGATGTCGCCGGCAGGCTGCGCGTGGCTTTTCTGCCTAATTACTGCATA TCGCAGGCGGAAAAGGTGGTGCCTGCCGCTGACCTGTCCGAACAGATATCCACCGCCGGCATGGAGGCTTCCGGCACGGG CAATATGAAGTTTGCGCTTAACGGAGCGTTGACCATAGGCACGCTGGACGGTGCCAATGTGGAAATAATGGAGGAAGTGG GAGCCGAAAATATTTTTATATTCGGCCTCAAGGCGCATGAAGTGGCGGAAAAAAGGCGTTCCGGATACAACCCCCGGGAA TTTTATGAAAACGATGCAGAGCTGCGCCGGGTGATGGATATGATCGGTTCGGGCTTTTTTTCTCCCGACGAACGCGGGTT GTTCAGCCCTGTGTATGACAGCCTGATGCACCACGGCGACTATTACATGCTTATGGCCGATTACCGTCCCTACATGGAGG CGCAGGCCGCTGTGGACGCGCTGTACCTTGATCAGGACCAGTGGGTACGCAAGTCCATTCTCAATGCCGCCAACATGGGT AAATTTTCCAGCGACCGTTCGGTCATGGAGTATGCCCGCGGCATCTGGCATGTGGAGCCTCTCGGCAAATAG
Upstream 100 bases:
>100_bases CTTATAACGTTTCGCAGCTGTACACCGCCGCCCGGGGCAGCTACTATGAAGGTATTACCCGCCGGCAGACCGCTGTGTCG CCGTGCAACAAGGAGGCCTC
Downstream 100 bases:
>100_bases CCTGCCGCCTTGTACGCTGAACCCGCACGGGATGCATGTTCCGTGCGGGTTTTCTGTGGCGGATGTCTGCGGCAGCAGTT CATGTTTTTTCAGGCGTGCT
Product: glycogen/starch/alpha-glucan phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 823; Mature: 822
Protein sequence:
>823_residues MSRVCKMSKNVREVFRLDELKDDIRRNMVALLGNDPRSKRKFSYYNALAYSVRERLVDLWMRTQSDYYDSMAKRVYYLSM EFLPGRFLMNYLTNMGIVDECREIVAELGFSLEELEEEEWDAGLGNGGLGRLASCYLDSMVSQNIPGYGYGILYDYGIFY QSIVNGNQEERCDNWRRHGCPWEITRLDTLYEVKFYGRSETYYDSDGNVRFRWVDTENVMAMPCDILIPGYGCSHVSNMR LWTAQSSREFNLSDFNRGDYIGAMHGKVMSENITKVLYPNDQFLQGMELRLKQQYFLVSATFQDILRRYLKQHTSLAALP EAVAVQLNDTHPAIAIPELMRLLMDVYGMGWDVAWDICTRTFAYTNHTVLPEALETWPVDLLGRLLPRHMQIIYEINRRF LEGVAATFPGDTERLSRMSVIQEEGGQRVRMANLAIVGSHTVNGVAALHSNILQTGLFRDFHEYYPRKIRNVTNGVTPRR WLMQCNPALSRLITQSIGPEWCCNLEKLRELVPLAEDSAFRDAWARAKLENKRLLSRYVLRKVQMGINPNTLFDMQFKRM HEYKRQLLNVMHVISLFNRIKDNPSADITPRTVLFGGKAAPGYYQAKLIIRLINEVARVVNADADVAGRLRVAFLPNYCI SQAEKVVPAADLSEQISTAGMEASGTGNMKFALNGALTIGTLDGANVEIMEEVGAENIFIFGLKAHEVAEKRRSGYNPRE FYENDAELRRVMDMIGSGFFSPDERGLFSPVYDSLMHHGDYYMLMADYRPYMEAQAAVDALYLDQDQWVRKSILNAANMG KFSSDRSVMEYARGIWHVEPLGK
Sequences:
>Translated_823_residues MSRVCKMSKNVREVFRLDELKDDIRRNMVALLGNDPRSKRKFSYYNALAYSVRERLVDLWMRTQSDYYDSMAKRVYYLSM EFLPGRFLMNYLTNMGIVDECREIVAELGFSLEELEEEEWDAGLGNGGLGRLASCYLDSMVSQNIPGYGYGILYDYGIFY QSIVNGNQEERCDNWRRHGCPWEITRLDTLYEVKFYGRSETYYDSDGNVRFRWVDTENVMAMPCDILIPGYGCSHVSNMR LWTAQSSREFNLSDFNRGDYIGAMHGKVMSENITKVLYPNDQFLQGMELRLKQQYFLVSATFQDILRRYLKQHTSLAALP EAVAVQLNDTHPAIAIPELMRLLMDVYGMGWDVAWDICTRTFAYTNHTVLPEALETWPVDLLGRLLPRHMQIIYEINRRF LEGVAATFPGDTERLSRMSVIQEEGGQRVRMANLAIVGSHTVNGVAALHSNILQTGLFRDFHEYYPRKIRNVTNGVTPRR WLMQCNPALSRLITQSIGPEWCCNLEKLRELVPLAEDSAFRDAWARAKLENKRLLSRYVLRKVQMGINPNTLFDMQFKRM HEYKRQLLNVMHVISLFNRIKDNPSADITPRTVLFGGKAAPGYYQAKLIIRLINEVARVVNADADVAGRLRVAFLPNYCI SQAEKVVPAADLSEQISTAGMEASGTGNMKFALNGALTIGTLDGANVEIMEEVGAENIFIFGLKAHEVAEKRRSGYNPRE FYENDAELRRVMDMIGSGFFSPDERGLFSPVYDSLMHHGDYYMLMADYRPYMEAQAAVDALYLDQDQWVRKSILNAANMG KFSSDRSVMEYARGIWHVEPLGK >Mature_822_residues SRVCKMSKNVREVFRLDELKDDIRRNMVALLGNDPRSKRKFSYYNALAYSVRERLVDLWMRTQSDYYDSMAKRVYYLSME FLPGRFLMNYLTNMGIVDECREIVAELGFSLEELEEEEWDAGLGNGGLGRLASCYLDSMVSQNIPGYGYGILYDYGIFYQ SIVNGNQEERCDNWRRHGCPWEITRLDTLYEVKFYGRSETYYDSDGNVRFRWVDTENVMAMPCDILIPGYGCSHVSNMRL WTAQSSREFNLSDFNRGDYIGAMHGKVMSENITKVLYPNDQFLQGMELRLKQQYFLVSATFQDILRRYLKQHTSLAALPE AVAVQLNDTHPAIAIPELMRLLMDVYGMGWDVAWDICTRTFAYTNHTVLPEALETWPVDLLGRLLPRHMQIIYEINRRFL EGVAATFPGDTERLSRMSVIQEEGGQRVRMANLAIVGSHTVNGVAALHSNILQTGLFRDFHEYYPRKIRNVTNGVTPRRW LMQCNPALSRLITQSIGPEWCCNLEKLRELVPLAEDSAFRDAWARAKLENKRLLSRYVLRKVQMGINPNTLFDMQFKRMH EYKRQLLNVMHVISLFNRIKDNPSADITPRTVLFGGKAAPGYYQAKLIIRLINEVARVVNADADVAGRLRVAFLPNYCIS QAEKVVPAADLSEQISTAGMEASGTGNMKFALNGALTIGTLDGANVEIMEEVGAENIFIFGLKAHEVAEKRRSGYNPREF YENDAELRRVMDMIGSGFFSPDERGLFSPVYDSLMHHGDYYMLMADYRPYMEAQAAVDALYLDQDQWVRKSILNAANMGK FSSDRSVMEYARGIWHVEPLGK
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI5032009, Length=810, Percent_Identity=54.0740740740741, Blast_Score=855, Evalue=0.0, Organism=Homo sapiens, GI21361370, Length=810, Percent_Identity=53.4567901234568, Blast_Score=853, Evalue=0.0, Organism=Homo sapiens, GI71037379, Length=810, Percent_Identity=52.4691358024691, Blast_Score=840, Evalue=0.0, Organism=Homo sapiens, GI255653002, Length=810, Percent_Identity=50.4938271604938, Blast_Score=789, Evalue=0.0, Organism=Homo sapiens, GI257900462, Length=668, Percent_Identity=54.7904191616767, Blast_Score=751, Evalue=0.0, Organism=Escherichia coli, GI2367228, Length=808, Percent_Identity=51.2376237623762, Blast_Score=851, Evalue=0.0, Organism=Escherichia coli, GI48994936, Length=748, Percent_Identity=47.7272727272727, Blast_Score=703, Evalue=0.0, Organism=Caenorhabditis elegans, GI17564550, Length=822, Percent_Identity=51.2165450121654, Blast_Score=846, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=822, Percent_Identity=51.2165450121654, Blast_Score=845, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=862, Percent_Identity=46.2877030162413, Blast_Score=721, Evalue=0.0, Organism=Drosophila melanogaster, GI78706832, Length=820, Percent_Identity=52.8048780487805, Blast_Score=852, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=820, Percent_Identity=52.8048780487805, Blast_Score=852, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 94487; Mature: 94356
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVCKMSKNVREVFRLDELKDDIRRNMVALLGNDPRSKRKFSYYNALAYSVRERLVDLW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH MRTQSDYYDSMAKRVYYLSMEFLPGRFLMNYLTNMGIVDECREIVAELGFSLEELEEEEW HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH DAGLGNGGLGRLASCYLDSMVSQNIPGYGYGILYDYGIFYQSIVNGNQEERCDNWRRHGC CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC PWEITRLDTLYEVKFYGRSETYYDSDGNVRFRWVDTENVMAMPCDILIPGYGCSHVSNMR CEEEEECCEEEEEEEECCCCCEECCCCCEEEEEECCCCCEECCCCEEECCCCCCCCCCCE LWTAQSSREFNLSDFNRGDYIGAMHGKVMSENITKVLYPNDQFLQGMELRLKQQYFLVSA EEECCCCCCCCCCCCCCCCEEEHHHCHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHH TFQDILRRYLKQHTSLAALPEAVAVQLNDTHPAIAIPELMRLLMDVYGMGWDVAWDICTR HHHHHHHHHHHHHCHHHHCCHHEEEEECCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHH TFAYTNHTVLPEALETWPVDLLGRLLPRHMQIIYEINRRFLEGVAATFPGDTERLSRMSV HHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH IQEEGGQRVRMANLAIVGSHTVNGVAALHSNILQTGLFRDFHEYYPRKIRNVTNGVTPRR HHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH WLMQCNPALSRLITQSIGPEWCCNLEKLRELVPLAEDSAFRDAWARAKLENKRLLSRYVL HHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RKVQMGINPNTLFDMQFKRMHEYKRQLLNVMHVISLFNRIKDNPSADITPRTVLFGGKAA HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCC PGYYQAKLIIRLINEVARVVNADADVAGRLRVAFLPNYCISQAEKVVPAADLSEQISTAG CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHCC MEASGTGNMKFALNGALTIGTLDGANVEIMEEVGAENIFIFGLKAHEVAEKRRSGYNPRE CCCCCCCCEEEEEECEEEEEECCCCCHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCHHH FYENDAELRRVMDMIGSGFFSPDERGLFSPVYDSLMHHGDYYMLMADYRPYMEAQAAVDA HHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH LYLDQDQWVRKSILNAANMGKFSSDRSVMEYARGIWHVEPLGK HHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SRVCKMSKNVREVFRLDELKDDIRRNMVALLGNDPRSKRKFSYYNALAYSVRERLVDLW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH MRTQSDYYDSMAKRVYYLSMEFLPGRFLMNYLTNMGIVDECREIVAELGFSLEELEEEEW HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH DAGLGNGGLGRLASCYLDSMVSQNIPGYGYGILYDYGIFYQSIVNGNQEERCDNWRRHGC CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC PWEITRLDTLYEVKFYGRSETYYDSDGNVRFRWVDTENVMAMPCDILIPGYGCSHVSNMR CEEEEECCEEEEEEEECCCCCEECCCCCEEEEEECCCCCEECCCCEEECCCCCCCCCCCE LWTAQSSREFNLSDFNRGDYIGAMHGKVMSENITKVLYPNDQFLQGMELRLKQQYFLVSA EEECCCCCCCCCCCCCCCCEEEHHHCHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHH TFQDILRRYLKQHTSLAALPEAVAVQLNDTHPAIAIPELMRLLMDVYGMGWDVAWDICTR HHHHHHHHHHHHHCHHHHCCHHEEEEECCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHH TFAYTNHTVLPEALETWPVDLLGRLLPRHMQIIYEINRRFLEGVAATFPGDTERLSRMSV HHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH IQEEGGQRVRMANLAIVGSHTVNGVAALHSNILQTGLFRDFHEYYPRKIRNVTNGVTPRR HHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH WLMQCNPALSRLITQSIGPEWCCNLEKLRELVPLAEDSAFRDAWARAKLENKRLLSRYVL HHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RKVQMGINPNTLFDMQFKRMHEYKRQLLNVMHVISLFNRIKDNPSADITPRTVLFGGKAA HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCC PGYYQAKLIIRLINEVARVVNADADVAGRLRVAFLPNYCISQAEKVVPAADLSEQISTAG CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHCC MEASGTGNMKFALNGALTIGTLDGANVEIMEEVGAENIFIFGLKAHEVAEKRRSGYNPRE CCCCCCCCEEEEEECEEEEEECCCCCHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCHHH FYENDAELRRVMDMIGSGFFSPDERGLFSPVYDSLMHHGDYYMLMADYRPYMEAQAAVDA HHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH LYLDQDQWVRKSILNAANMGKFSSDRSVMEYARGIWHVEPLGK HHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2645169; 3047129; 9278503; 2975249; 3097003 [H]