| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is exo [H]
Identifier: 78046504
GI number: 78046504
Start: 1075905
End: 1076891
Strand: Reverse
Name: exo [H]
Synonym: XCV0948
Alternate gene names: 78046504
Gene position: 1076891-1075905 (Counterclockwise)
Preceding gene: 78046505
Following gene: 78046503
Centisome position: 20.8
GC content: 68.19
Gene sequence:
>987_bases GTGACCACACCGACCGACCCGCTCGACGCTGCGCCGCTGGCCATCCGGCGCCCGACCCCGCTGTATCTGGTGGATGCCAG CCTGTACGTGTTCCGCGCCTGGCATTCCATCCCGGACGAATTTCAGGATGTGCAGGGCTGGCCGACCAATGCGGTGCACG GGTTTGCGCGGTTTCTGCTGGACCTGCTCGAACGCGAGGATCCACAGCACATCACCATTGCCTTTGACGAAGCCCTGGAC AGCTGCTTCCGGCATGCGATCTACCCGGCCTACAAAGGCAACCGCACGCCTGCGCCGGATGCGTTGCGCCGCCAGTTCGC GCATTGCAAGGCGCTGTGCGCAGCGCTCGGGCTGAGCGTGCTGGCCCACCGCGATTACGAGGCCGACGACCTGATCGGCA GCGCGCTGCACAGCGTGCGGGCGCATGGCTTGCGCGGGGTGATCGTGTCGGCCGACAAGGACCTGTCGCAGTTATTGCTC GAGCATGACGAGCAGTGGGACTACGCGCGCAACCAGCGCTGGGGCATCGACGGGGTGAAGGCGCGCCATGGCGTGCATGC GCACCAGATCGCCGACTACCTGGCGTTGTGCGGCGATGCCATCGACAACATCCCCGGCGTGACCGGCATCGGCGCCAAAT CGGCAGCGGTGCTGCTGGCGCACTTCGGCAGCCTGGATGCGCTGCTGGAGCGCATCGACGAGATTCCCTTCCTGCGCCTG CGCGGCGCGGCGCAGATGGCGGTGCGGCTGCGCGAACAGCGCGAACATGCATTGCTGTGGCGTCAGCTCACCACCATCGC GCTCGACGCGCCGCTGGCGCTCACCGAGGCCGGCTTCACGCGTGCCCACGCCGATGCGGACATGCTCACCGGGTTGTGCG AGAGCCTGCGCTTCGGCCCGCTCACCCGGCGCCGTCTGTTGGCCGCCAGCACCGGCGCCGCCGCACCGTTTCCTCCCGTT TCCCTGGCACAAGGTCCCCGCCCATGA
Upstream 100 bases:
>100_bases ACGAACGCATCGCCGGCTTCATCCACATCGGCACGCCGCGCATGCAGGTGCCCGAACGCGAGCGCCCGGACCCGCGTGCC TTGCTGCGCGACTGGACCCC
Downstream 100 bases:
>100_bases ACCGACACGACACCCCGCCCACCGTGGTCTACGAAGGCAAGTACCAGCGCATGGTCGTGCGTGGCACCTGGGAGTATTCC GAGCGTGTGCATGCCGGCGG
Product: exodeoxyribonuclease IX
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MTTPTDPLDAAPLAIRRPTPLYLVDASLYVFRAWHSIPDEFQDVQGWPTNAVHGFARFLLDLLEREDPQHITIAFDEALD SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLIGSALHSVRAHGLRGVIVSADKDLSQLLL EHDEQWDYARNQRWGIDGVKARHGVHAHQIADYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRL RGAAQMAVRLREQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRRRLLAASTGAAAPFPPV SLAQGPRP
Sequences:
>Translated_328_residues MTTPTDPLDAAPLAIRRPTPLYLVDASLYVFRAWHSIPDEFQDVQGWPTNAVHGFARFLLDLLEREDPQHITIAFDEALD SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLIGSALHSVRAHGLRGVIVSADKDLSQLLL EHDEQWDYARNQRWGIDGVKARHGVHAHQIADYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRL RGAAQMAVRLREQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRRRLLAASTGAAAPFPPV SLAQGPRP >Mature_327_residues TTPTDPLDAAPLAIRRPTPLYLVDASLYVFRAWHSIPDEFQDVQGWPTNAVHGFARFLLDLLEREDPQHITIAFDEALDS CFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLIGSALHSVRAHGLRGVIVSADKDLSQLLLE HDEQWDYARNQRWGIDGVKARHGVHAHQIADYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLR GAAQMAVRLREQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRRRLLAASTGAAAPFPPVS LAQGPRP
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity. It is able to utilize nicked circular duplex DNA as a template and can unwind the parental DNA strand from its template [H]
COG id: COG0258
COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Escherichia coli, GI1790294, Length=280, Percent_Identity=37.5, Blast_Score=174, Evalue=8e-45, Organism=Escherichia coli, GI226510970, Length=250, Percent_Identity=31.2, Blast_Score=94, Evalue=1e-20,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR003583 - InterPro: IPR012337 [H]
Pfam domain/function: PF01612 3_5_exonuc; PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 36023; Mature: 35892
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPTDPLDAAPLAIRRPTPLYLVDASLYVFRAWHSIPDEFQDVQGWPTNAVHGFARFLL CCCCCCCCCCCCEEECCCCCEEEECHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHH DLLEREDPQHITIAFDEALDSCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSV HHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LAHRDYEADDLIGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGIDGVK HHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCHHHCCCCCCCCHH ARHGVHAHQIADYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRL HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEH RGAAQMAVRLREQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCHHHHHHHHHHHCCCC LTRRRLLAASTGAAAPFPPVSLAQGPRP HHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TTPTDPLDAAPLAIRRPTPLYLVDASLYVFRAWHSIPDEFQDVQGWPTNAVHGFARFLL CCCCCCCCCCCEEECCCCCEEEECHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHH DLLEREDPQHITIAFDEALDSCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSV HHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LAHRDYEADDLIGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGIDGVK HHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCHHHCCCCCCCCHH ARHGVHAHQIADYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRL HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEH RGAAQMAVRLREQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCHHHHHHHHHHHCCCC LTRRRLLAASTGAAAPFPPVSLAQGPRP HHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6276402; 8346018; 9278503; 6183253; 6302278; 7035456; 3883192; 1989886; 8469987; 8260491; 9514742; 9888810; 10588690; 8442659 [H]