| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ydfJ [H]
Identifier: 77459451
GI number: 77459451
Start: 3710729
End: 3713113
Strand: Reverse
Name: ydfJ [H]
Synonym: Pfl01_3229
Alternate gene names: 77459451
Gene position: 3713113-3710729 (Counterclockwise)
Preceding gene: 77459452
Following gene: 77459448
Centisome position: 57.67
GC content: 60.29
Gene sequence:
>2385_bases ATGACTTCCTTGAGCACTCATCATCAGGACAAGGCGACGTTTCTCGAGCGCCTGATCTTCAACAACCGCCCGGCAGTGAT CGTGATCTGCCTGCTGGTCAGCATTTTCCTGTTCTGGCAGGCCACGCTGATCCGTCCGTCCACCAGTTTCGAAAAGATGA TCCCGCTCAAGCATCCGTTCATTGAAAAGATGATGGAGCACCGCAACGATCTGGCGAACCTGGGCAATACCGTACGCATT TCGGTGGAAGCGAAGGATGGCGACATCTTCTCCAAGGAGTATATGGAGACCCTGCGTCAGATCAACGACGAGGTGTTCTA CATCTCCGGCGTCGACCGTTCCGGCCTCAAGTCGCTGTGGAGCCCGAGCGTGCGCTGGACCGAAGTCACCGAGGAAGGTT TTGCCGGCGGCGAAGTGATCCCGCAGAGCTACAACGGCTCCCAGGACAGCCTCGATCTGTTGCGCAACAACGTGCTCAAG TCCGGTCAGGTCGGGCGTCTGGTGGCCAACGACTTCAAGTCGAGCATCGTCGACATCCCGCTGCTGGAGTCCTACCCGGA CCCGCAGGACCAGGGCAAGCTGCTGGCGCTGGACTATCGCCAGTTCTCCCATGAGCTCGAAGACAAGATCCGCAACAAGT TCGAAGCGCAGAACCCCAACGTCAAGATCCACATTGTCGGTTTCGCCAAGAAGGTCGGCGACCTGATCGACGGCCTGGTG ATGGTGGTGATGTTCTTCGGCATCGCTTTCGTCATCACTCTGATCCTGCTGCTGTGGTTCACCAACTGCCTGCGCAGCAC CGTGGCGGTGTTGAGCACCACGCTGGTGGCGGTGGTCTGGCAGTTGGGGTTAATGCACTTCTTCGGGTTCGGCCTCGATC CGTATTCGATGCTTGTACCGTTCCTGATCTTCGCCATCGGCATTTCCCACGGCGTGCAGAAAATCAACGGGATCGCCCTG CAATCCGGCGAGGCCGACAACGCCCTGACCGCCGCACGGCGGACCTTCCGTCAATTGTTCCTGCCGGGGATGATCGCGAT TCTGGCGGACGCCGTCGGCTTCATCACGCTGCTGATCATCGACATCGGCGTGATCCGCGAGCTGGCCATCGGCGCTTCCA TCGGCGTGGCGGTGATCGTGTTCACCAACCTGATCCTGCTGCCGGTGGCGATTTCCTATGTCGGCATCAGCAAGCGCGCC ATCGCCAAGAGCAAGAAGGACGCGCACCGCGAACATCCGTTCTGGCGCCTGCTGTCGAACTTTGCCAACCCGAAAGTCGC CCCGATCTCCATCGCCCTGGCGCTGGTCGCCTTCGGTGGCGGCCTCTGGTACAGCCAGAACCTGAAGATCGGCGACCTCG ACCAGGGCGCGCCGGAACTGCGTCCGGACTCGCGCTACAACAAGGACAACAACTTCATCATCAGCAACTACTCGACCAGC TCCGACGTGCTGGTGGTGATGGTCAAGACCAAGTCCGAAGGCTGCTCGCGCTATGAAGCCATGGCGCCGATCGATGAGCT GATGTGGAAGATGCAGAACACCGAGGGCGTGCAGTCGGCGATCTCGCTGGTGACCGTGTCCAAGCAGATGATCAAGGGCA TGAACGAGGGCAACCTGAAATGGGAAACCCTGTCGCGCAACCCGGACGTGCTGAACAACTCCATCGCCCGGGCCGACGGC CTGTACAACAACAGTTGCTCGCTGGCGCCGGTGCTGGTGTTCCTCAACGACCACAAGGCTGAAACCCTCGACCGCGCAGT GCATGCGGTGCAGGACTTCGCCAAGGAAAACAACAAGGAAGGCCTGGAATTCATCCTCGCCGCCGGTAACGCCGGGATCG AGGCGGCTACCAACGAGGTGATCAAGAAGTCCGAGCTGACCATCCTGATCCTGGTGTACATCTGCGTGGCGGTCATGTGC ATGATCACCTTCCGCTCGTGGGCGGCGACCCTGTGCATCGTGCTGCCGCTGGTGCTGACCTCGGTGCTGGGCAACGCGCT GATGGCGTTCATGGGCATCGGCGTGAAGGTGGCGACGCTGCCGGTGGTGGCGCTGGGCGTGGGGATCGGCGTGGACTACG GCATCTACATCTACAGCCGCCTGGAAAGTTTCCTGCGTGCCGGCCTGCCGTTGCAGGAAGCCTATTACCAGACCCTCAAA TCCACCGGTAAAGCGGTGCTGTTCACCGGTCTGTGCCTGGCCATCGGCGTGTGCACCTGGATCTTCTCGGCGATCAAGTT CCAGGCCGACATGGGCCTGATGCTGACCTTCATGCTGCTGTGGAACATGTTCGGTGCGCTGTGGCTGCTGCCGGCACTGG CGAAGTTCCTGATCAAGCCGGAGAAACTGGCGGGGCAGAAGGGCAATTCGTTGTTTGCTCACTGA
Upstream 100 bases:
>100_bases GGCAATCTGATCCTGAGCGGGCAGGGTGGCGTCCGGGTCACTTCGCCGAACGGCGCCGAGCTGGGCAAATGAGCCGAATC AATAATAAGAAGGCGGGGCT
Downstream 100 bases:
>100_bases TCCGGTTGGCTGAAATGAAAAAGCCGCAACCTTGAAGGGTTGCGGCTTTTTTATGGTGCAAGATCAAAAGCCCCTCACCC TAGCCCTCTCCCAAAGGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 794; Mature: 793
Protein sequence:
>794_residues MTSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPFIEKMMEHRNDLANLGNTVRI SVEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLWSPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLK SGQVGRLVANDFKSSIVDIPLLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLV MVVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVPFLIFAIGISHGVQKINGIAL QSGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRA IAKSKKDAHREHPFWRLLSNFANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTS SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLKWETLSRNPDVLNNSIARADG LYNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKEGLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMC MITFRSWAATLCIVLPLVLTSVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKPEKLAGQKGNSLFAH
Sequences:
>Translated_794_residues MTSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPFIEKMMEHRNDLANLGNTVRI SVEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLWSPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLK SGQVGRLVANDFKSSIVDIPLLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLV MVVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVPFLIFAIGISHGVQKINGIAL QSGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRA IAKSKKDAHREHPFWRLLSNFANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTS SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLKWETLSRNPDVLNNSIARADG LYNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKEGLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMC MITFRSWAATLCIVLPLVLTSVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKPEKLAGQKGNSLFAH >Mature_793_residues TSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPFIEKMMEHRNDLANLGNTVRIS VEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLWSPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLKS GQVGRLVANDFKSSIVDIPLLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLVM VVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVPFLIFAIGISHGVQKINGIALQ SGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLIIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRAI AKSKKDAHREHPFWRLLSNFANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTSS DVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLKWETLSRNPDVLNNSIARADGL YNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKEGLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMCM ITFRSWAATLCIVLPLVLTSVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLKS TGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKPEKLAGQKGNSLFAH
Specific function: Unknown
COG id: COG1033
COG function: function code R; Predicted exporters of the RND superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mmpL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004869 - InterPro: IPR000731 [H]
Pfam domain/function: PF03176 MMPL [H]
EC number: NA
Molecular weight: Translated: 87586; Mature: 87455
Theoretical pI: Translated: 7.77; Mature: 7.77
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPF CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHH IEKMMEHRNDLANLGNTVRISVEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLW HHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC SPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLKSGQVGRLVANDFKSSIVDIP CCCCEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC LLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLV HHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHH MVVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH FLIFAIGISHGVQKINGIALQSGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLII HHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRAIAKSKKDAHREHPFWRLLSN HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH FANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTS HCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLK CCEEEEEEECCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCE WETLSRNPDVLNNSIARADGLYNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKE EEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC GLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMCMITFRSWAATLCIVLPLVLT CCEEEEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKP HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EKLAGQKGNSLFAH HHHCCCCCCCCCCC >Mature Secondary Structure TSLSTHHQDKATFLERLIFNNRPAVIVICLLVSIFLFWQATLIRPSTSFEKMIPLKHPF CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHH IEKMMEHRNDLANLGNTVRISVEAKDGDIFSKEYMETLRQINDEVFYISGVDRSGLKSLW HHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC SPSVRWTEVTEEGFAGGEVIPQSYNGSQDSLDLLRNNVLKSGQVGRLVANDFKSSIVDIP CCCCEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC LLESYPDPQDQGKLLALDYRQFSHELEDKIRNKFEAQNPNVKIHIVGFAKKVGDLIDGLV HHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHH MVVMFFGIAFVITLILLLWFTNCLRSTVAVLSTTLVAVVWQLGLMHFFGFGLDPYSMLVP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH FLIFAIGISHGVQKINGIALQSGEADNALTAARRTFRQLFLPGMIAILADAVGFITLLII HHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGISKRAIAKSKKDAHREHPFWRLLSN HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH FANPKVAPISIALALVAFGGGLWYSQNLKIGDLDQGAPELRPDSRYNKDNNFIISNYSTS HCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC SDVLVVMVKTKSEGCSRYEAMAPIDELMWKMQNTEGVQSAISLVTVSKQMIKGMNEGNLK CCEEEEEEECCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCE WETLSRNPDVLNNSIARADGLYNNSCSLAPVLVFLNDHKAETLDRAVHAVQDFAKENNKE EEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC GLEFILAAGNAGIEAATNEVIKKSELTILILVYICVAVMCMITFRSWAATLCIVLPLVLT CCEEEEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVLGNALMAFMGIGVKVATLPVVALGVGIGVDYGIYIYSRLESFLRAGLPLQEAYYQTLK HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH STGKAVLFTGLCLAIGVCTWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALAKFLIKP HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EKLAGQKGNSLFAH HHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]