| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is hemK [H]
Identifier: 74318512
GI number: 74318512
Start: 2567450
End: 2568313
Strand: Direct
Name: hemK [H]
Synonym: Tbd_2494
Alternate gene names: 74318512
Gene position: 2567450-2568313 (Clockwise)
Preceding gene: 74318511
Following gene: 74318513
Centisome position: 88.23
GC content: 72.57
Gene sequence:
>864_bases ATGACCGGGCACGCGGCCACCGTCGCTGGCCTGCTCGACGTCGCGACCGACCGAGTCGGCCGCGCGCTCGGGCTCGACAA GCGCGAAGCCCGGCTCGAAGCCCGCGTGCTCGCCGCCCACGCCTGGCAGGTGACGCCGGCCTGGCTCATCGCGCACGACA CCGATGTGGCGACGGCGCCGCAAACCGCCGCCTTCGACGCGCTGCTCGCCCGGCGCCTGGGCGGCGAACCGATCGCCTAC ATCGTCGGCGCGCGCGAGTTCTACGGGCGCAGGTTCGAAGTATCGCCCGCGGTATTGATTCCACGGCCGGAGACCGAACT CCTCGTCGAGTTGGCGCTCGCACGGATCCCGCCCGACGAGACGACCACGGTGCTCGACCTCGGCACCGGCAGCGGCTGCA TCGCGATCACGCTGGCGCTGGAGCGCTCGCGGGCGCGCGTGACCGCGGTCGAGCGCTCGCCAGCTGCGCTGGCGCTCGCC CGCCGCAACGCGCAAACGCTCGGCGCCAGCGTCGAATTTTCGGCCGGCGACTGGTTCAGCGACCTGACGGGGCGCAGCTA CGACCTCATCGTCGCGAACCCGCCCTACATCGCCGACGCCGACCCGCATCTCGCCCGAGGCGACCTGCGCCACGAACCGG TCGCCGCGCTGGCCTCTGGTGCGGATGGACTCGACGAGCTGCGGCGGCTGATCGACGGGGCGCGCGACCACCTGCGGCGC CCTGGAATGCTGTTGCTGGAGCACGGCTACGACCAGGCCGACGCGGTGCATGCGCTGCTTCGCAGCGGCGGCTTCGCCCG CCCGCGCTGCTGGCATGACCTCGCCGGCAACCCGCGCGTGAGCGGCGCGGAATTGTCGAAATAA
Upstream 100 bases:
>100_bases CGATGCGGTGATGGACGGCGACCTCGGCGAACTGCTCGACGCGCTCGCCGCCGAGCACCAGGCCGCGCAGCTGGCGACCT TGTCCGGCGAGGGCTGAGCG
Downstream 100 bases:
>100_bases TTTACAGGTGCCCGGCATGGCTTGCGTCCAGCCCACCGCCCCGCACGCGCCCGCGGGCTTCGCCAGCCGGCATCGAGATG CTGGTGCGATTCTTGCTGGT
Product: modification methylase HemK
Products: NA
Alternate protein names: M.XfaHemK2P [H]
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MTGHAATVAGLLDVATDRVGRALGLDKREARLEARVLAAHAWQVTPAWLIAHDTDVATAPQTAAFDALLARRLGGEPIAY IVGAREFYGRRFEVSPAVLIPRPETELLVELALARIPPDETTTVLDLGTGSGCIAITLALERSRARVTAVERSPAALALA RRNAQTLGASVEFSAGDWFSDLTGRSYDLIVANPPYIADADPHLARGDLRHEPVAALASGADGLDELRRLIDGARDHLRR PGMLLLEHGYDQADAVHALLRSGGFARPRCWHDLAGNPRVSGAELSK
Sequences:
>Translated_287_residues MTGHAATVAGLLDVATDRVGRALGLDKREARLEARVLAAHAWQVTPAWLIAHDTDVATAPQTAAFDALLARRLGGEPIAY IVGAREFYGRRFEVSPAVLIPRPETELLVELALARIPPDETTTVLDLGTGSGCIAITLALERSRARVTAVERSPAALALA RRNAQTLGASVEFSAGDWFSDLTGRSYDLIVANPPYIADADPHLARGDLRHEPVAALASGADGLDELRRLIDGARDHLRR PGMLLLEHGYDQADAVHALLRSGGFARPRCWHDLAGNPRVSGAELSK >Mature_286_residues TGHAATVAGLLDVATDRVGRALGLDKREARLEARVLAAHAWQVTPAWLIAHDTDVATAPQTAAFDALLARRLGGEPIAYI VGAREFYGRRFEVSPAVLIPRPETELLVELALARIPPDETTTVLDLGTGSGCIAITLALERSRARVTAVERSPAALALAR RNAQTLGASVEFSAGDWFSDLTGRSYDLIVANPPYIADADPHLARGDLRHEPVAALASGADGLDELRRLIDGARDHLRRP GMLLLEHGYDQADAVHALLRSGGFARPRCWHDLAGNPRVSGAELSK
Specific function: Probable protein methyltransferase. May methylate a Gln residue in target proteins [H]
COG id: COG2890
COG function: function code J; Methylase of polypeptide chain release factors
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hemK family [H]
Homologues:
Organism=Homo sapiens, GI7705409, Length=249, Percent_Identity=30.5220883534137, Blast_Score=87, Evalue=1e-17, Organism=Escherichia coli, GI1787463, Length=252, Percent_Identity=43.2539682539683, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI87082085, Length=175, Percent_Identity=40.5714285714286, Blast_Score=114, Evalue=7e-27, Organism=Drosophila melanogaster, GI24582226, Length=210, Percent_Identity=32.3809523809524, Blast_Score=106, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR004556 - InterPro: IPR019874 - InterPro: IPR007848 [H]
Pfam domain/function: PF05175 MTS [H]
EC number: 2.1.1.-
Molecular weight: Translated: 30729; Mature: 30598
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGHAATVAGLLDVATDRVGRALGLDKREARLEARVLAAHAWQVTPAWLIAHDTDVATAP CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCC QTAAFDALLARRLGGEPIAYIVGAREFYGRRFEVSPAVLIPRPETELLVELALARIPPDE CHHHHHHHHHHHHCCCCEEEEEECHHHHCCEEECCCEEEECCCCHHHHHHHHHHHCCCCC TTTVLDLGTGSGCIAITLALERSRARVTAVERSPAALALARRNAQTLGASVEFSAGDWFS CEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHCHHHHCCEEEECCCCCHH DLTGRSYDLIVANPPYIADADPHLARGDLRHEPVAALASGADGLDELRRLIDGARDHLRR HCCCCCEEEEEECCCEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCC PGMLLLEHGYDQADAVHALLRSGGFARPRCWHDLAGNPRVSGAELSK CCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TGHAATVAGLLDVATDRVGRALGLDKREARLEARVLAAHAWQVTPAWLIAHDTDVATAP CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCC QTAAFDALLARRLGGEPIAYIVGAREFYGRRFEVSPAVLIPRPETELLVELALARIPPDE CHHHHHHHHHHHHCCCCEEEEEECHHHHCCEEECCCEEEECCCCHHHHHHHHHHHCCCCC TTTVLDLGTGSGCIAITLALERSRARVTAVERSPAALALARRNAQTLGASVEFSAGDWFS CEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHCHHHHCCEEEECCCCCHH DLTGRSYDLIVANPPYIADADPHLARGDLRHEPVAALASGADGLDELRRLIDGARDHLRR HCCCCCEEEEEECCCEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCC PGMLLLEHGYDQADAVHALLRSGGFARPRCWHDLAGNPRVSGAELSK CCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]